New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4736296 =	48 (0.890)	3 (0.060)	3/256	NT	6.5%	coding (290/705 nt)	sdhB	succinate dehydrogenase iron‑sulfur subunit
	?	NC_002947	4736394 =	40 (0.770)					coding (192/705 nt)	sdhB	succinate dehydrogenase iron‑sulfur subunit

CTTCTCGTACTGCTTGTAGAAGATGCTCATATCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATCCAGCACCATCAGGTCCTTGCCGCCGGTATCGACGTCGAACGACTCCATTTTTGGCGCC  >  NC_002947/4736247‑4736541                                                                                                                                                    |                                                                                                                                                     cTTCTCGTACTGCTTGTAGAAGATGCTCATATCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCgttcatgt                                                                                                                                                     >  4:191551/1‑149 (MQ=255)   tctcGTACTGCTTGTAGAAGATGCTCATATCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCgttcatgtt                                                                                                                                                    >  3:292636/1‑148 (MQ=255)    ctcGTACTGCTTGTAGAAGATGCTCATATCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCgttcatgttca                                                                                                                                                  >  8:62780/1‑149 (MQ=255)       gTACTGCTTGTAGAAGATGCTCATATCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGc                                                                                                                                               >  2:126307/1‑149 (MQ=255)           tGCTTGTAGAAGATGCTCATATCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATc                                                                                                                                           >  7:158333/1‑149 (MQ=255)             cTTGTAGAAGATGCTCATATCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCgttcatg                                                                                                                                                      <  1:249214/136‑1 (MQ=255)             cTTGTAGAAGATGCTCATATCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCgttcatg                                                                                                                                                      >  2:249214/1‑136 (MQ=255)                gTAGAAGATGCTCATATCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGa                                                                                                                                        <  6:273267/147‑1 (MQ=255)                gTAGAAGATGCTCATATCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAAc                                                                                                                                      >  2:260445/1‑149 (MQ=255)                   gaagaTGCTCATATCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGCACGCAGAACCACCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGc                                                                                                                                   <  4:36877/149‑1 (MQ=255)                     agaTGCTCATATCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCa                                                                                                                                  >  3:300251/1‑148 (MQ=255)                             atatCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTc                                                                                                                         >  4:73349/1‑149 (MQ=255)                                 cGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACgg                                                                                                                     >  2:39184/1‑149 (MQ=255)                                 cGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACgg                                                                                                                     >  3:174183/1‑149 (MQ=255)                                  gACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACgg                                                                                                                     <  8:302270/148‑1 (MQ=255)                                       ccaGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAg                                                                                                              <  4:174183/149‑1 (MQ=255)                                        caGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGc                                                                                                             <  7:62780/149‑1 (MQ=255)                                           gTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGAc                                                                                                          <  4:54508/149‑1 (MQ=255)                                            tCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACg                                                                                                         <  5:266064/149‑1 (MQ=255)                                                gAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGGTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAACCGCCTTCACGGC‑AGGCGCGCCGGTAc                                                                                                     >  5:4588/1‑149 (MQ=255)                                                  atgaacggcaagaacggcctggcctgcatcaccccgctgtcggcggtggtgaagggcggcaagctggttctgcgtcctctgccaggcctgccggtcatGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTAc                                                                                                     >  3:217528‑M2/99‑147 (MQ=255)                                                      acggcaagaacggcctggcctgcatcaccccgctgtcggcggtggtgaagggcggcaagctggttctgcgtcctctgccaggcctgccggtcatGTTCATGCCATCGGAACCGCAAACGCCTTCACGGc                                                                                                                    <  3:110035‑M2/35‑1 (MQ=255)                                                      acggcaagaacggcctggcctgcatcaccccgctgtcggcggtggtgaagggcggcaagctggttctgcgtcctctgccaggcctgccggtcatGTTCATGCCATCGGAACCGCAAACGCCTTCACGGc                                                                                                                    >  4:110035‑M2/95‑129 (MQ=255)                                                         gCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAAccc                                                                                            <  1:260445/149‑1 (MQ=255)                                                           aGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTTATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACga                                                                                                   <  7:215915/140‑1 (MQ=255)                                                           aGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACga                                                                                                   >  8:215915/1‑140 (MQ=255)                                                               cTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTcc                                                                                      <  2:213225/149‑1 (MQ=255)                                                                tGGCAGAGGACGCAGCACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCCTTCATGCCGTTCATGTTCATGCCAACGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAACCCCTCGTCCt                                                                                     >  4:38541/1‑149 (MQ=255)                                                                      agGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCt                                                                               <  4:300251/149‑1 (MQ=255)                                                                       ggACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCtt                                                                              <  4:292636/149‑1 (MQ=255)                                                                        gACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCtt                                                                              >  2:83787/1‑148 (MQ=255)                                                                         aCGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGTCAGGGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGa                                                                            <  5:317969/149‑1 (MQ=255)                                                                         aCGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGa                                                                            <  7:143184/149‑1 (MQ=255)                                                                             aGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTcc                                                                                      <  4:311444/135‑1 (MQ=255)                                                                             aGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTcc                                                                                      >  3:311444/1‑135 (MQ=255)                                                                                aCCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGc                                                                     <  8:231505/149‑1 (MQ=255)                                                                                        gccgccCTTCACCACCGCCGAAAGCGGGGTGATGCAGGCCAGCCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGTC‑AGCAGCGACGGTACCAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACAt                                                             >  4:326347/1‑149 (MQ=255)                                                                                          cgccCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATcc                                                           <  8:198565/149‑1 (MQ=255)                                                                                           gccCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGTGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATCCa                                                          <  1:83787/149‑1 (MQ=255)                                                                                           gccCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATCCa                                                          <  1:39184/149‑1 (MQ=255)                                                                                                   ccaccGCCGACAGCGGTGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATCCAGCACCATc                                                  <  3:191551/149‑1 (MQ=255)                                                                                                     accGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATCCAGCACCATCAg                                                <  1:126307/149‑1 (MQ=255)                                                                                                                         gCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATCCAGCACCATCAGGTCCTTGCCGCCGGTATCGa                            >  4:253684/1‑149 (MQ=255)                                                                                                                         gCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATCCAGCACCATCAGGTCCTTGCCGCCGGTATCGa                            >  4:222668/1‑149 (MQ=255)                                                                                                                                  gccGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATCCAGCACCATCAGGTCCTTGCCGCCGGTATc                              >  2:316671/1‑138 (MQ=255)                                                                                                                                  gccGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATCCAGCACCATCAGGTCCTTGCCGCCGGTATc                              <  1:316671/138‑1 (MQ=255)                                                                                                                                    cGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGCGAGGAGCGACGGTACGAGAAACCATCGTCATTTTCCTTGATCAGTGCCATTACATCCAGCACAATCAGGACCTTGCCGCCGGTATCGCCGTCGAACg                   >  1:84324/1‑148 (MQ=255)                                                                                                                                      tgcTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATCCAGCACCATCAGGTCCTTGCCGCCGGTATCGACGTCGAACGACTc               <  6:4588/147‑1 (MQ=255)                                                                                                                                             cGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATCCAGCACCATCAGGTCCTTGCCGCCGGTATCGACGTCGAACGACTCCAttttt        <  3:222668/149‑1 (MQ=255)                                                                                                                                               ttcatgttcatgCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACCTCCAGCACCATCAGGTCCTTGCCGCCGGTATCGACGTCGAACGACTCCATTTTTgg      >  5:329561/1‑149 (MQ=255)                                                                                                                                                    gttcatgCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACCAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATCCAGCACCATCAGGTCCTTGCCGCCGGTATCGACGTCGAACGACTCCATTTTTGGCGcc  >  1:1706/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CTTCTCGTACTGCTTGTAGAAGATGCTCATATCGACCACCAGGTCACGAATGACCGGCAGGCCTGGCAGAGGACGCAGAACCAGCTTGCCGCCCTTCACCACCGCCGACAGCGGGGTGATGCAGGCCAGGCCGTTCTTGCCGTTCATGTTCATGCCATCGGAACCGCAAACGCCTTCACGGC‑AGGAGCGACGGTACGAGAAACCCTCGTCCTTTTCCTTGATCAGTGCCAATACATCCAGCACCATCAGGTCCTTGCCGCCGGTATCGACGTCGAACGACTCCATTTTTGGCGCC  >  NC_002947/4736247‑4736541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.