| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3242761 = | 137 (1.220) | 3 (0.030) | 3/482 | 12.7 | 2.2% | coding (554/1488 nt) | uxaA | altronate hydrolase |
| ? | NC_000913 | 3242787 = | 134 (1.240) | coding (528/1488 nt) | uxaA | altronate hydrolase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
ATCTGGATCAGTATCGCTATCAACCTGATTTTCAGGATCTGCCTGCGCAAGCGGCAGATCGTGAAGTGCAGATCTATCGTCGCGCTAACGGCGATGTCGGGGTGCGTAATGAGCTGTGGATCCTGCCAACCGTGGGCTGTGTCAACGGCATCGCGCGGCAGATCCAGAACCGTTTTCTGAAAGAGACCAACAACGCCGAAGGTACTGACGGCGTGTTCCTCTTCAGCCACACCTACGGCTGCTCACAGCTGGGCGACGATCACATTAATACCCGCACCATGCTGCAAAACATGGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3243058‑3242761‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggtgcgGGTATTAATGTGATCGTCGCCCAGCTGTGAGCAGCCGTAGGTGTGGCTGAAGAGGAACACGCCGTCAGTACCTTCGGCGTTGTTGGTCTCTTTCAGAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTG > NC_000913/3242787‑3243081 ATCTGGATCAGTATCGCTATCAACCTGATTTTCAGGATCTGCCTGCGCAAGCGGCAGATCGTGAAGTGCAGATCTATCGTCGCGCTAACGGCGATGTCGGGGTGCGTAATGAGCTGTGGATCCTGCCAACCGTGGGCTGTGTCAACGGCATCGCGCGGCAGATCCAGAACCGTTTTCTGAAAGAGACCAACAACGCCGAAGGTACTGACGGCGTGTTCCTCTTCAGCCACACCTACGGCTGCTCACCGCTGGGCGACGATCACATTAATACCCGCACCATGCTGCAAAACATGtacagcc > 1:390125/1‑293ATCTGGATCAGTATCGCTATCAACCTGATTTTCAGGATCTGCCTGCGCAAGCGGCAGATCGTGAAGTGCAGATCTATCGTCGCGCTAACGGCGATGTCGGGGTGCGTAATGAGCTGTGGATCCTGCCAACCGTGGGCTGTGTCAACGGCATCGCGCGGCAGATCCAGAACCGTTTTCTGAAAGAGACCAACAACGCCGAAGGTACTGACGGCATGTTCCTCTTAAGCCACAGCTACGGCTGCTTACAGCTGGGCGACGAACACATAAATACCCGCACCATGCTGCAAAACATGGTGCGGca > 1:405399/1‑299 ATCGTCGCGCTAACGGCGATGTCGGGGTGCGTAATGAGCTGTGGATCCTGCCAACCGTGGGCTGTGTCAACGGCATCGCGCGGCAGATCCAGAACCGTTTTCTGAAAGAGACCAACAACGCCGAAGGTACTGACGGCGTGTTCCTCTTCAGCCACACCAACGGCTGGTCACCGCTGGGCGACGATCACATTAATACCCGCACCATTCTGCCAAACATG > 2:421932/1‑218 TCGTCGCGCTAACGGCGATGTCGGGGTGCGTAATGAGCTGTGGATCCTGCCAACCGTGGGCTGTGTCAACGGCATCGCGCGGCAGATCCAGAACCGTTTTCTGAAAGAGACCAACAACGCCGAAGGTACTGACGGCGTGTTCCTCTTCAGCCACACCTACGGCTGCTCACAGCTGGGCGACGATCACATTAATACCCGCCCCATGCTGCAAAACATGn > 2:985976/1‑217 nCGCGCTAACGGCGATGTCGGGGTGCGTAATGAGCTGTGGATCCTGCCAACCGTGGGCTGTGTCAACGGCATCGCGCGGCAGATCCAGAACCGTTTTCTGAAAGAGACCAACAACGCCGAAGGTACTGACGGCGTGTTCCTCTTCAGCCACACCTACGGCTGCTCACAGCTGGGCGACGATCACATTAATACCCGCACCATGCTGCAAAACATGGTGC < 2:1043692/217‑1 ATCCAGAACCGTTTTCTGAAAGAGACCAACAACGCCGAAGGTACTGACGGCGTGTTCCTCTTCAGCCACACCTACGGCTGCTCACAGCTGGGCGACGATCACATTAATACCCGCACCATGCTGCAAAACATGGTGCGGGTATTAATGTGATCGTCGCCCAGCTGTGAGCAGCCGTAGGT < 1:709763/179‑1 ATCCAGAACCGTTTTCTGAAAGAGACCAACAACGCCGAAGGTACTGACGGCGTGTTCCTCTTCAGCCACACCTACGGCTGCTCACAGCTGGGCGACGATCACATTAATACCCGCACCATGCTGCAAAACATGGTGCGGGTATTAATGTGATCGTCGCCCAGCTGTGAGCAGCCGTAGGT > 2:709741/1‑179 CATGGTGCGGGTATTAATGTGATCGTCGCCCAGCTGTGAGCAGCTGTAGGTGTGGCTGAAGAGGAACACGCCGTCAGTACCTTCGGCGTTGTTGGTCTCTTTCAGAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCAC < 2:672968/216‑1 CATGGTGCGGGTATTAATGTGATCGTCGCCCAGCTGTGAGCAGCCGTAGGTGTGGCTGAAGAGGAACACGCCGTCAGTACCTTCGGCGTTGTTGGTCGCGTTCAGAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCAC < 2:142945/216‑1 CATGGTGCGGGTAGTAATGTTCTCGTCGCCCAGCTGGGAGCAGCCGTATGTGTGGCTGAAGAGGAACACGCCGTCAGTACCTTCTGCGTTGTTGGTCTCTTTCAGAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCAC < 2:626599/216‑1 ATGGTGCGGGTATTAATGTGATCGTCGCCCAGCTGTGAGCAGCCGTAGGTGTGGCTGAAGAGGAACACGCCGTCAGTACCTTCGGCGTTGTTGGTCTCTTTCAGAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCCCGGTTGTCAGGATCCACTGCTCATTCCGCACCCCGACATCGCCGTTATCGCGACGATAGATCTGCACTT > 2:159531/1‑217 TGGTGCGGGTATTAATGTGATCGTCGCCCAGCTGTGAGCAGCCGTAGGTGTGGCTGAAGAGGAACACGCCGTCAGTACCTTCGGCGTTGTTGGTCTCTTTCAGAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTTCGCAGGCAGATCCTGAAAATCAGGTAGATAGCGATACTGATCCAGATCGCCCAGATTAGTGCGCGTATT > 1:803771/1‑301 tTGCGGGTATTAATGTGATCGTCGCCCAGCTGTGAGCAGCCGTAGGTGTGGCTGAAGAGGAACACGCCGTCAGTACCTTCGGCGTTGTTGGTCTCTTTCAGAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTG < 1:116157/299‑1 GTGCGGGTATTAATTGGATCGTCGCCCAGCTGTGAGCAGCCGTAGGTGTGGCTGAAGAGGAACACGCCGTCAGTACCTTCGGCGTTGTTGGTCTCTTTCAGAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTG < 1:999367/300‑1 GTGCGGGTATTAATGTGATCGTCGCCCAGCTGTGAGCAGCCGTAGGTGTGGCTGAAGAGGAACACGCCGTCAGTACCTTCGGCGTTGTTGGTCTCTTTCAGAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCAC < 2:26426/217‑1 GTGCGGGTATTAATGTGATCGTCGCCCAGCTGTGAGCAGCCGTAGGTGTGGCTGAAGAGGAACACGCCGTCAGTACCTTCGGCGTTGTTGGTCTCTTTCAGAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCAC < 2:240541/217‑1 nCGGGTATTAATGTGATCGTCGCCCAGCTGTGAGCAGCCGTAGGTGTGGCTGAAGAGGAACACGCCGTCAGTACCTTCGGCGTTGTTGGTCTCTTTCAGAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGAT < 2:1060157/217‑1 CGGTTATTAATGTGATCGTCGCCCAGCTGTGAGCAGCCGTAGGTGTGGCTGAAGAGGAACACGCCGTCAGTACCTGCGGCGTTGTTGGTCTCTTTCAGAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGAT < 2:27176/217‑1 CGGGTATGAATGTGATCGTCGCCCGGCGGTGAGCAGGCGTAGGTGTGGCTGGAGAGGAACACGCCTTCAGTACCTTCGGCGTTGGTGGTCTCTTTCCGAAAACGGTTCTGGATGTGCCGCGCGATGCCGTTGACACAGCCCGCGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACTTCGCCGTTAGCGCGACGATAGATCTGCACTTCACGAT < 2:156681/217‑1 ATCTGGATCAGTATCGCTATCAACCTGATTTTCAGGATCTGCCTGCGCAAGCGGCAGATCGTGAAGTGCAGATCTATCGTCGCGCTAACGGCGATGTCGGGGTGCGTAATGAGCTGTGGATCCTGCCAACCGTGGGCTGTGTCAACGGCATCGCGCGGCAGATCCAGAACCGTTTTCTGAAAGAGACCAACAACGCCGAAGGTACTGACGGCGTGTTCCTCTTCAGCCACACCTACGGCTGCTCACAGCTGGGCGACGATCACATTAATACCCGCACCATGCTGCAAAACATGGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3243058‑3242761‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggtgcgGGTATTAATGTGATCGTCGCCCAGCTGTGAGCAGCCGTAGGTGTGGCTGAAGAGGAACACGCCGTCAGTACCTTCGGCGTTGTTGGTCTCTTTCAGAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTG > NC_000913/3242787‑3243081 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |