mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,875,532 | 0 | A | T | 23.2% | 154.3 / 16.4 | 69 | H32L (CAT→CTT) | yidX | putative lipoprotein |
| * | NC_000913 | 3,875,521 | 0 | T | C | 21.5% | 109.7 / 21.0 | 65 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| * | NC_000913 | 3,875,522 | 0 | C | G | 20.3% | 139.6 / 16.9 | 65 | L29V (CTG→GTG) | yidX | putative lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 79 (0.790) | 34 (0.500) | 10/338 | 5.4 | 37.2% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 61 (0.890) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 13 (0.130) | 13/490 | 6.8 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 9 (0.090) | 9/482 | 8.3 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 704375 = | 87 (0.870) | 7 (0.070) | 6/482 | 9.8 | 7.6% | coding (432/1947 nt) | nagE | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components |
| ? | NC_000913 | 704405 = | 86 (0.880) | coding (462/1947 nt) | nagE | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components | |||||
| * | ? | NC_000913 | 3927418 = | 95 (0.950) | 5 (0.050) | 5/474 | 10.3 | 5.3% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | NC_000913 | 3927457 = | 89 (0.930) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | NC_000913 | 4522458 = | 115 (1.140) | 4 (0.040) | 4/478 | 11.1 | 3.5% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | NC_000913 | 4522501 = | 107 (1.110) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | NC_000913 | = 4041215 | 94 (0.940) | 3 (0.030) | 3/478 | 11.8 | 3.2% | coding (219/528 nt) | mobB | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4041221 | 90 (0.930) | coding (213/528 nt) | mobB | molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 2796365 = | 95 (0.950) | 3 (0.030) | 3/478 | 11.8 | 3.2% | coding (422/450 nt) | ygaU | uncharacterized protein |
| ? | NC_000913 | 2796386 = | 92 (0.950) | coding (401/450 nt) | ygaU | uncharacterized protein | |||||
| * | ? | NC_000913 | 3868320 = | 90 (0.900) | 3 (0.030) | 3/484 | 11.9 | 3.3% | coding (990/1248 nt) | yidR | DUF3748 family protein |
| ? | NC_000913 | 3868341 = | 90 (0.920) | coding (969/1248 nt) | yidR | DUF3748 family protein | |||||
| * | ? | NC_000913 | 3563404 = | 136 (1.350) | 4 (0.040) | 3/484 | 11.9 | 2.9% | coding (1392/1506 nt) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| ? | NC_000913 | 3563422 = | 132 (1.350) | coding (1410/1506 nt) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding | |||||