Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 850,092 Δ2,855 bp [rhtA][mntS] [rhtA], ompX, opgE, [mntS]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 850092 852946 2855 102 [0] [0] 102 [rhtA]–[mntS] [rhtA], ompX, opgE, [mntS]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 8500910 (0.000)102 (1.120) 83/296 0.1 100% coding (7/888 nt) rhtA threonine and homoserine efflux system
?NC_000913 852947 = 0 (0.000)coding (51/129 nt) mntS Mn(2)‑response protein, MntR‑repressed

Only 100 of 102 total aligned reads displayed.

TCCTAATGCCAGACGCAGCGCAGTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCGTGGAGTGTACTGGATATACCCAATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACTAAAATGCGCCAGGATTGATGGAATCATTAGTCTGGTG  >  NC_000913/849945‑850237
                                                                                                                                                  |                                                                                                                                                  
tCCTAATGCCAGACGCAGCGCAGTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCttt                                                                                                                                                 <  2:260741‑M1/150‑4 (MQ=255)
tCCTAATGCCAGACGCAGCGCAGTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCttt                                                                                                                                                 <  1:1299220‑M1/150‑4 (MQ=255)
 ccTAATGCCAGACGCAGCGCAGTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaa                                                                                                                                               <  2:912042‑M1/151‑6 (MQ=255)
 ccNNNNNNNNNNNNNNGCGCNGTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTNCNCCCTGAATAGACGCCATGGCAACGNGCAATATGANNATTGGTAACCAGACCGGNATTTTACGTAATGAACCttta                                                                                                                                                >  1:49217‑M1/1‑146 (MQ=255)
    aaTGCCAGACGCAGCGCAGTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagg                                                                                                                                            >  2:510558‑M1/1‑143 (MQ=255)
    aaTGCCAGACGCAGCGCAGTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaa                                                                                                                                              <  1:1342330‑M1/149‑7 (MQ=255)
     aTGCCAGACGCAGCGCAGTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaaggg                                                                                                                                           <  2:718473‑M1/151‑10 (MQ=255)
           gACGCAGCGCAGTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatg                                                                                                                                     <  2:63008‑M1/151‑16 (MQ=255)
           gACGCAGCGCAGTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatg                                                                                                                                     >  1:95985‑M1/1‑136 (MQ=255)
           gACGCAGCGCAGTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatg                                                                                                                                     >  1:1394074‑M1/1‑136 (MQ=255)
            aCGCAGCGCAGTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatg                                                                                                                                     >  1:523363‑M1/1‑135 (MQ=255)
              gcagcgcagTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgact                                                                                                                                  >  2:149335‑M1/1‑133 (MQ=255)
                 gcgcagTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaa                                                                                                                                >  1:914976‑M1/1‑130 (MQ=255)
                     agTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacg                                                                                                                           >  1:1312746‑M1/1‑126 (MQ=255)
                     agTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacg                                                                                                                           >  1:439767‑M1/1‑126 (MQ=255)
                      gTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgc                                                                                                                          >  2:224419‑M1/1‑125 (MQ=255)
                            cccGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatac                                                                                                                    <  2:507330‑M1/151‑33 (MQ=255)
                             ccGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTTACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatac                                                                                                                    >  1:1187451‑M1/1‑118 (MQ=255)
                                gTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacct                                                                                                                >  1:465934‑M1/1‑115 (MQ=255)
                                  gcgcCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctct                                                                                                              <  1:868952‑M1/151‑39 (MQ=255)
                                    gcCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttg                                                                                                            <  2:251895‑M1/151‑41 (MQ=255)
                                     cccACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttg                                                                                                            >  2:1025792‑M1/1‑110 (MQ=255)
                                       caccaGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaac                                                                                                         >  2:454317‑M1/1‑108 (MQ=255)
                                        accaGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaact                                                                                                        >  2:658177‑M1/1‑107 (MQ=255)
                                        accaGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaact                                                                                                        <  1:777102‑M1/151‑45 (MQ=255)
                                          caGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactca                                                                                                      <  1:284257‑M1/151‑47 (MQ=255)
                                            gagGAAAAAGAGACTTAGCTAACGAGGCTCAACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGGCCGGCATTTTACGTAATGAGCCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcatt                                                                                                    >  1:817376‑M1/1‑103 (MQ=255)
                                                       gACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctc                                                                                         >  1:900275‑M1/1‑92 (MQ=255)
                                                       gACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctc                                                                                         <  2:1294138‑M1/151‑60 (MQ=255)
                                                       gACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctc                                                                                         >  2:1337770‑M1/1‑92 (MQ=255)
                                                       gACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctc                                                                                         >  2:540881‑M1/1‑92 (MQ=255)
                                                            aGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgac                                                                                    >  1:1051344‑M1/1‑87 (MQ=255)
                                                            aGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgac                                                                                    >  2:326129‑M1/1‑87 (MQ=255)
                                                            aGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgac                                                                                    <  2:59559‑M1/151‑65 (MQ=255)
                                                               tAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttg                                                                                 >  2:565461‑M1/1‑84 (MQ=255)
                                                                aaCGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgc                                                                                >  2:691026‑M1/1‑83 (MQ=255)
                                                                aaCGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgc                                                                                >  2:653848‑M1/1‑83 (MQ=255)
                                                                    aGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaat                                                                            <  1:988935‑M1/151‑73 (MQ=255)
                                                                     ggCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatc                                                                           <  1:222635‑M1/151‑74 (MQ=255)
                                                                       cTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatccc                                                                         >  1:374950‑M1/1‑76 (MQ=255)
                                                                         ccACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgt                                                                       <  2:570905‑M1/151‑78 (MQ=255)
                                                                         ccACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgt                                                                       >  2:69720‑M1/1‑74 (MQ=255)
                                                                          cACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtc                                                                      >  2:475868‑M1/1‑73 (MQ=255)
                                                                           aCCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcg                                                                     <  2:17003‑M1/151‑80 (MQ=255)
                                                                           aCCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcg                                                                     >  2:428747‑M1/1‑72 (MQ=255)
                                                                               tGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatcc                                                                 >  1:1416256‑M1/1‑68 (MQ=255)
                                                                                gAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatc                                                                  <  2:319879‑M1/149‑83 (MQ=255)
                                                                                gAATAGACGACGTGGAAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTTCGTAATGAACCtttaaagggagaatgactaaccatgcgtatacgcctcttgatgtcactcataaggcctcctgacttgctaatcccgttgataat                                                                <  1:6979‑M1/151‑85 (MQ=255)
                                                                                  aTAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttg                                                              <  1:168729‑M1/151‑87 (MQ=255)
                                                                                  aTAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttg                                                              <  2:780919‑M1/151‑87 (MQ=255)
                                                                                  aTAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttg                                                              <  1:1338094‑M1/151‑87 (MQ=255)
                                                                                    aGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttg                                                              >  1:962976‑M1/1‑63 (MQ=255)
                                                                                     gACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagg                                                           <  1:550055‑M1/151‑90 (MQ=255)
                                                                                      aCGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgaggg                                                          <  1:716958‑M1/151‑91 (MQ=255)
                                                                                         ccATGGCAACGCGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatg                                                       >  1:1032058‑M1/1‑58 (MQ=255)
                                                                                         ccATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatg                                                       <  2:708887‑M1/151‑94 (MQ=255)
                                                                                         ccATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatg                                                       >  1:721812‑M1/1‑58 (MQ=255)
                                                                                         ccATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatg                                                       <  2:10927‑M1/151‑94 (MQ=255)
                                                                                           aTGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacccgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgat                                                     <  1:227611‑M1/151‑96 (MQ=255)
                                                                                           aTGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgat                                                     >  2:794788‑M1/1‑56 (MQ=255)
                                                                                             ggCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattg                                                   >  2:877094‑M1/1‑54 (MQ=255)
                                                                                               cAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgc                                                  >  1:115215‑M1/1‑52 (MQ=255)
                                                                                                aaCGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcat                                                <  2:751649‑M1/151‑101 (MQ=255)
                                                                                                   gAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattac                                             <  2:1150039‑M1/151‑104 (MQ=255)
                                                                                                    aGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattaca                                            <  2:465925‑M1/151‑105 (MQ=255)
                                                                                                       aaTATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatac                                         >  1:5709‑M1/1‑44 (MQ=255)
                                                                                                        atatGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatac                                         >  2:574791‑M1/1‑43 (MQ=255)
                                                                                                          atGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatac                                         >  1:1193013‑M1/1‑41 (MQ=255)
                                                                                                              cTATTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatat                                   >  2:224701‑M1/1‑37 (MQ=255)
                                                                                                                aTTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagc                                <  2:570235‑M1/151‑117 (MQ=255)
                                                                                                                aTTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagc                                >  2:1021281‑M1/1‑35 (MQ=255)
                                                                                                                aTTGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatata                                  <  1:1200724‑M1/149‑115 (MQ=255)
                                                                                                                 ttGGTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagc                                >  2:190141‑M1/1‑34 (MQ=255)
                                                                                                                   ggTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcaca                             <  2:399860‑M1/151‑120 (MQ=255)
                                                                                                                   ggTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcac                              <  2:1168169‑M1/150‑119 (MQ=255)
                                                                                                                   ggTAACCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcac                              <  2:1440556‑M1/150‑119 (MQ=255)
                                                                                                                       aCCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggct                         >  1:746012‑M1/1‑28 (MQ=255)
                                                                                                                       aCCAGACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggct                         <  1:1291679‑M1/151‑124 (MQ=255)
                                                                                                                           gACCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatat                     <  2:1054022‑M1/151‑128 (MQ=255)
                                                                                                                            aCCGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatatt                    <  2:1312749‑M1/151‑129 (MQ=255)
                                                                                                                             ccGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatatta                   <  2:914980‑M1/151‑130 (MQ=255)
                                                                                                                             ccGGCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatatta                   <  2:1266910‑M1/151‑130 (MQ=255)
                                                                                                                               ggCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattata                 <  1:1205292‑M1/151‑132 (MQ=255)
                                                                                                                               ggCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattat                  >  2:186034‑M1/1‑20 (MQ=255)
                                                                                                                                gCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatat                <  2:924023‑M1/151‑133 (MQ=255)
                                                                                                                                gCATTTTACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatat                >  1:493190‑M1/1‑19 (MQ=255)
                                                                                                                                   ttttACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatatagc             >  1:450781‑M1/1‑16 (MQ=255)
                                                                                                                                    tttACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatatagc             <  1:224426‑M1/150‑136 (MQ=255)
                                                                                                                                    tttACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatatagc             <  1:569131‑M1/150‑136 (MQ=255)
                                                                                                                                      tACGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatatagctat          >  1:988687‑M1/1‑13 (MQ=255)
                                                                                                                                       aCGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatatagctat          <  2:163697‑M1/150‑139 (MQ=255)
                                                                                                                                        cGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatatagctattg        >  1:1058103‑M1/1‑11 (MQ=255)
                                                                                                                                        cGTAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatatagctattg        >  2:1417888‑M1/1‑11 (MQ=255)
                                                                                                                                          tAATGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatatagctattgct      >  2:23866‑M1/1‑9 (MQ=255)
                                                                                                                                           aaTGAACCtttaaagggagaatgcctaaacccgcgcatacacctcttgaactaattcaaaagacctcctgacttgcaaatcccgtcaatccttgagggaggattgcattacatacagatatagcacaggctatattataaagcttttgct      <  1:232930‑M1/150‑143 (MQ=255)
                                                                                                                                            aTGAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatatagctattgctaa    <  1:565466‑M1/151‑145 (MQ=255)
                                                                                                                                              gAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatatagctattgctaaaa  <  1:441739‑M1/151‑147 (MQ=255)
                                                                                                                                              gAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatatagctattgctaaaa  <  2:1026132‑M1/151‑147 (MQ=255)
                                                                                                                                              gAACCtttaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatatagctattgctaaa   <  2:900278‑M1/150‑146 (MQ=255)
                                                                                                                                              gAACCttcaaagggagaatgactaaacacgcgcatacacctcttgaactcattcataagacctcctgacttgctaatcccgtcgatccttgagggatgattgcattacatacagatatagcacaggctatattatatagctattgctaaa   <  2:677162‑M1/150‑146 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
TCCTAATGCCAGACGCAGCGCAGTGACACCCGGTGCGCCCACCAGAGGAAAAAGTGACTTAGCTAACGAGGCTCCACCCTGAATAGACGCCATGGCAACGAGCAATATGACTATTGGTAACCAGACCGGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCGTGGAGTGTACTGGATATACCCAATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACTAAAATGCGCCAGGATTGATGGAATCATTAGTCTGGTG  >  NC_000913/849945‑850237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.