New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1242577 =36 (0.780)5 (0.120) 5/260 2.9 12.9% coding (504/915 nt) ldcA murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A
?NC_000913 1242595 = 36 (0.880)coding (486/915 nt) ldcA murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A
Rejected: Frequency below cutoff threshold.

GCATACGTTCGACCCGGAAAGGGTGCTCGTTAATATCTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACA  >  NC_000913/1242444‑1242721
                                                                                                                                     |                                                                                                                                                
tggcaatgtcatcacctttagcggccccatgctggtagcaaactttggcgcggatgaactgaacgcctttaccgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCGGGc                                                                                                                                  <  1:5489‑M1/17‑1 (MQ=255)
     cGTTCGACCCGGAAAGGGTGCTCGTTAATATCTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc                                                                                                                             >  2:566945/1‑150 (MQ=255)
           aCCCGGAAAGGGTGCTCGTGAATATCTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGAGCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGcc                                                                                                                      <  1:450951/151‑1 (MQ=255)
                     ggTGCTCGTTAATATCTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATgg                                                                                                             <  2:688185/150‑1 (MQ=255)
                           cGTTACTCTTTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCCATGGTGAAGGt                                                                                                      >  2:682195/1‑151 (MQ=255)
                           cGTTAATATCTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAGCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGt                                                                                                      >  2:455621/1‑151 (MQ=255)
                                    cTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCg                                                                                             <  2:205868/151‑1 (MQ=255)
                                       ccAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTaa                                                                                          <  2:77072/151‑1 (MQ=255)
                                           cACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgc                                                                                       <  1:549557/150‑1 (MQ=255)
                                             ccAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag                                                                                    >  1:331874/1‑151 (MQ=255)
                                             ccAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag                                                                                    >  2:386601/1‑151 (MQ=255)
                                             ccAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag                                                                                    >  2:364907/1‑151 (MQ=255)
                                             ccAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag                                                                                    >  1:435517/1‑151 (MQ=255)
                                               aGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagc                                                                                   >  1:273595/1‑150 (MQ=255)
                                               aGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagc                                                                                   >  1:8158/1‑150 (MQ=255)
                                                gAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATCGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagcca                                                                                 >  2:253701/1‑151 (MQ=255)
                                                cgcggatgaactgaacgcctttaccgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagcc                                                                                  >  2:679919‑M1/86‑150 (MQ=255)
                                                     atgaactgaacgcctttaccgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGaaa                                                                             >  2:160943‑M1/81‑150 (MQ=255)
                                                        ttCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATgg                                                                          <  2:397016/150‑1 (MQ=255)
                                                         tctcAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTg                                                                        >  2:1959/1‑151 (MQ=255)
                                                               tttttGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGt                                                                  <  1:454412/151‑1 (MQ=255)
                                                                         ccACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGGAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttc                                                        <  1:283817/151‑1 (MQ=255)
                                                                           aCGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcag                                                      >  2:231403/1‑151 (MQ=255)
                                                                           aCGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcag                                                      >  2:526043/1‑151 (MQ=255)
                                                                            cGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagt                                                     >  1:596383/1‑151 (MQ=255)
                                                                              gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                    >  1:275419/1‑150 (MQ=255)
                                                                              gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                    >  2:669312/1‑150 (MQ=255)
                                                                              gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                    >  2:647332/1‑150 (MQ=255)
                                                                              gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                    >  1:730878/1‑150 (MQ=255)
                                                                              gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                    >  2:564634/1‑150 (MQ=255)
                                                                              gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                    >  2:462184/1‑150 (MQ=255)
                                                                              gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                    >  2:42303/1‑150 (MQ=255)
                                                                              gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                    >  2:146094/1‑150 (MQ=255)
                                                                              gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                    >  1:682577/1‑150 (MQ=255)
                                                                                gtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCAt                                                 >  2:126705/1‑151 (MQ=255)
                                                                                atttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCAt                                                 <  2:376345‑M1/98‑1 (MQ=255)
                                                                                  aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATc                                                >  2:164055/1‑150 (MQ=255)
                                                                                           tGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAg                                      <  2:6471/151‑1 (MQ=255)
                                                                                                                       aatggcaaggggaaGGCCCGACGTGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGACAGAAATGGTGCTCGGTAAAGGCGTGCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAgg          >  1:601951‑M1/15‑151 (MQ=255)
                                                                                                                         caACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGtg        >  1:277749/1‑151 (MQ=255)
                                                                                                                             gTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGtgatga    >  2:189755/1‑151 (MQ=255)
                                                                                                                               ggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACa  <  2:233075‑M1/145‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                                
GCATACGTTCGACCCGGAAAGGGTGCTCGTTAATATCTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACA  >  NC_000913/1242444‑1242721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.