New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1242577 =	36 (0.780)	5 (0.120)	5/260	2.9	12.9%	coding (504/915 nt)	ldcA	murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A
	?	NC_000913	1242595 =	36 (0.880)					coding (486/915 nt)	ldcA	murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A
Rejected: Frequency below cutoff threshold.

CGTTCGACCCGGAAAGGGTGCTCGTTAATATCTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGAC  >  NC_000913/1242449‑1242740                                                                                                                                                   |                                                                                                                                                  cGTTCGACCCGGAAAGGGTGCTCGTTAATATCTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc                                                                                                                                                >  2:566945/1‑150 (MQ=255)  tgtcatcacctttagcggccccatgctggtagcaaactttggcgcggatgaactgaacgcctttaccgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaggcccgacatgtcgggccTTcccc                                                                                                                                              <  2:233075‑M2/6‑1 (MQ=255)       aCCCGGAAAGGGTGCTCGTGAATATCTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGAGCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGcc                                                                                                                                         <  1:450951/151‑1 (MQ=255)          cctttagcggccccatgctggtagcaaactttggcgcggatgaactgcacgcctttaccgagcaccatttctgtctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaggcccgacacgtcgggccTTCCCCTTGCCAtt                                                                                                                                      >  1:601951‑M2/138‑151 (MQ=255)                 ggTGCTCGTTAATATCTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATgg                                                                                                                                <  2:688185/150‑1 (MQ=255)                       cGTTACTCTTTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCCATGGTGAAGGt                                                                                                                         >  2:682195/1‑151 (MQ=255)                       cGTTAATATCTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAGCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGt                                                                                                                         >  2:455621/1‑151 (MQ=255)                                cTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCg                                                                                                                <  2:205868/151‑1 (MQ=255)                                   ccAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTaa                                                                                                             <  2:77072/151‑1 (MQ=255)                                       cACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgc                                                                                                          <  1:549557/150‑1 (MQ=255)                                         ccAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag                                                                                                       >  1:331874/1‑151 (MQ=255)                                         ccAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag                                                                                                       >  2:386601/1‑151 (MQ=255)                                         ccAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag                                                                                                       >  2:364907/1‑151 (MQ=255)                                         ccAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag                                                                                                       >  1:435517/1‑151 (MQ=255)                                           aGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagc                                                                                                      >  1:273595/1‑150 (MQ=255)                                           aGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagc                                                                                                      >  1:8158/1‑150 (MQ=255)                                            gAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATCGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagcca                                                                                                    >  2:253701/1‑151 (MQ=255)                                            cgcggatgaactgaacgcctttaccgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagcc                                                                                                     >  2:679919‑M1/86‑150 (MQ=255)                                                 atgaactgaacgcctttaccgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaggcccgacatgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAAt                                                                                               <  2:376345‑M2/53‑1 (MQ=255)                                                 atgaactgaacgcctttaccgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGaaa                                                                                                >  2:160943‑M1/81‑150 (MQ=255)                                                    ttCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATgg                                                                                             <  2:397016/150‑1 (MQ=255)                                                     tctcAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTg                                                                                           >  2:1959/1‑151 (MQ=255)                                                           tttttGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGt                                                                                     <  1:454412/151‑1 (MQ=255)                                                                     ccACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGGAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttc                                                                           <  1:283817/151‑1 (MQ=255)                                                                       aCGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcag                                                                         >  2:526043/1‑151 (MQ=255)                                                                       aCGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcag                                                                         >  2:231403/1‑151 (MQ=255)                                                                        cGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagt                                                                        >  1:596383/1‑151 (MQ=255)                                                                          gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                                       >  2:647332/1‑150 (MQ=255)                                                                          gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                                       >  2:564634/1‑150 (MQ=255)                                                                          gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                                       >  2:462184/1‑150 (MQ=255)                                                                          gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                                       >  2:42303/1‑150 (MQ=255)                                                                          gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                                       >  2:669312/1‑150 (MQ=255)                                                                          gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                                       >  1:682577/1‑150 (MQ=255)                                                                          gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                                       >  1:730878/1‑150 (MQ=255)                                                                          gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                                       >  1:275419/1‑150 (MQ=255)                                                                          gtgtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCgttcagtt                                                                       >  2:146094/1‑150 (MQ=255)                                                                            gtACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCAt                                                                    >  2:126705/1‑151 (MQ=255)                                                                            atttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCAt                                                                    <  2:376345‑M1/98‑1 (MQ=255)                                                                             tttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaggcccgacatgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCAt                                                                    >  2:160943‑M2/71‑150 (MQ=255)                                                                              aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATc                                                                   >  2:164055/1‑150 (MQ=255)                                                                                  ggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaggcccgacatgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCcgcg                                                               >  2:679919‑M2/66‑150 (MQ=255)                                                                                       tGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAg                                                         <  2:6471/151‑1 (MQ=255)                                                                                                                   aatggcaaggggaaGGCCCGACGTGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGACAGAAATGGTGCTCGGTAAAGGCGTGCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAgg                             >  1:601951‑M1/15‑151 (MQ=255)                                                                                                                     caACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGtg                           >  1:277749/1‑151 (MQ=255)                                                                                                                         gTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGtgatga                       >  2:189755/1‑151 (MQ=255)                                                                                                                           ggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACa                     <  2:233075‑M1/145‑1 (MQ=255)                                                                                                                                  gcccgacatgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCa               <  1:5489‑M2/133‑1 (MQ=255)                                                                                                                                               GGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGAc  >  1:483032‑M1/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CGTTCGACCCGGAAAGGGTGCTCGTTAATATCTTCCAGCACCAGAATACCGTTCTCAATTTTTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGAC  >  NC_000913/1242449‑1242740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.