New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | 2653484 = | 26 (0.810) | 3 (0.100) | 3/254 | NT | 11.0% | intergenic (+90/‑254) | fbp/USA300HOU_RS13650 | Fructose‑1,6‑bisphosphatase class 3/hypothetical protein |
? | USA300TCH1516_ALE | 2653543 = | 23 (0.730) | intergenic (+149/‑195) | fbp/USA300HOU_RS13650 | Fructose‑1,6‑bisphosphatase class 3/hypothetical protein |
GTGTCGGTCATTTCATTAATTTATTAGTTGATTTTGCATTTTTTTGCTGTAAAGTTGTTATAATACAGTTAACAGGAATTAGCATAGATACACCAATCCCCTCACTACTCGCAATAGTGAGGGGATTTTTTTCGGTGTAGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2653626‑2653484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaTGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTAC > USA300TCH1516_ALE/2653543‑2653638 tTGTCGGTCATTTTTTGAATTTATTAGTTTATTTTGCATTTTTTTGCTTTAAAGTTGTTATAATACAGTTAACAGTAATTAGCATAGATACACCAATCCCCTCACTACTCGCAATAGTGAGGGGATTTTTTTCGGTGTAGC < 2:228480/140‑1 GTGTCGGTCATTTCATTAATTTATTAGTTGATTTTGCATTTTTTTGCTGTAAAGTTGTTATAATACAGTTAACAGGAATTAGCATAGATACACCAATCCCCTCACTACTCGCAATAGTGAGGGGATTTTTTTCGGTGTAGC > 1:189463/1‑141 TGTCGGTCATTTCATTAATTTATTAGTTGATTTTGCATTTTTTTGCTGTAAAGTTGTTATAATACAGTTAACAGGAATTAGCATAGATACACCAATCTCCTCACTACTCGCAATAGTGAGGGGATTTTTTTCGGTGTAGCT > 2:150009/1‑141 AGCATAGATACACCAATCCCCTCACTACTCGCAATAGTGAGGGGATT‑‑‑‑‑‑GGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAACAATGCAAACTCAACTCATAACTTAATAAAATGACCGACAC > 2:228946/1‑141 CCAATCCCCTCACTACTCGCAATAGTGAGGGGATTTTTTTCGGTGTAGCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGC > 1:138811/1‑141 CCCTCACTACTCGCAATAGTGAGGGGATTTTTTTCGGTGTAGCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTAC < 2:138811/141‑1 GTGTCGGTCATTTCATTAATTTATTAGTTGATTTTGCATTTTTTTGCTGTAAAGTTGTTATAATACAGTTAACAGGAATTAGCATAGATACACCAATCCCCTCACTACTCGCAATAGTGAGGGGATTTTTTTCGGTGTAGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2653626‑2653484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaTGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTAC > USA300TCH1516_ALE/2653543‑2653638 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |