New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2653484 =	26 (0.810)	3 (0.100)	3/254	NT	11.0%	intergenic (+90/‑254)	fbp/USA300HOU_RS13650	Fructose‑1,6‑bisphosphatase class 3/hypothetical protein
	?	USA300TCH1516_ALE	2653543 =	23 (0.730)					intergenic (+149/‑195)	fbp/USA300HOU_RS13650	Fructose‑1,6‑bisphosphatase class 3/hypothetical protein

ACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTACTCCAATTTAACAAAATACTATATTAGTACTATATTTTTCATTAAC  >  USA300TCH1516_ALE/2653400‑2653683                                                                                                                                                |                                                                                                                                             gtgtcggtcattttattaagttatgagttgagtttgcattgttttgctgtaaagttgttataatacagttaacaggaattagcaTAGATACACC‑‑‑‑‑‑AATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCt                                                                                                                                           >  2:228946‑M1/85‑141 (MQ=255)                     gCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTACTTCCTGTTAACt                                                                                                                             >  1:115087/1‑141 (MQ=255)                      cACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTg                                                                                                                            >  1:28168/1‑141 (MQ=255)                         ttATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGtat                                                                                                                         >  1:88744/1‑141 (MQ=255)                                gTGGTAATGTGTTTATGCATTTGCGACGCAAACACGATGATAAATAGGCGAGCTAGCTACAGCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATaaca                                                                                                                  <  2:308291/141‑1 (MQ=255)                                         tgtTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAg                                                                                                         >  1:160999/1‑141 (MQ=255)                                          gtTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGc                                                                                                        >  1:383579/1‑141 (MQ=255)                                             tACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAACATTTTCTGACTATTGCGAGTTGGGAGGGGGTTGGTGTATCTATGCTAGTTCCTGTTAACTGTATTATAACTACTTTACAGCaaa                                                                                                     >  1:248600/1‑141 (MQ=255)                                                    tGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGc                                                                                              <  1:300365/141‑1 (MQ=255)                                                    tGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGc                                                                                              <  1:62064/141‑1 (MQ=255)                                                    tGGATACGCAAACAAGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGc                                                                                              <  2:218807/141‑1 (MQ=255)                                                       cTACGCAAACACGATGATAAATAGGCGACCTGGCTACACCGAAAAAACCCCCCTACTTGTTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCaaa                                                                                           <  1:168626/141‑1 (MQ=255)                                                       cTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTCGTGAGGGGAATGGTCTACCTATGCTAATTCATGTTAACTGTATTATAACAACTTTATCGC‑ATAAAATGCaaaa                                                                                          >  2:158515/1‑141 (MQ=255)                                                       cTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCaaa                                                                                           <  1:66618/141‑1 (MQ=255)                                                       cTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCaaa                                                                                           <  2:269204/141‑1 (MQ=255)                                                       cTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCaaa                                                                                           >  1:113984/1‑141 (MQ=255)                                                               acacGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGAGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACta                                                                                   >  2:185576/1‑141 (MQ=255)                                                                                      AGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGAGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGaca                                                            >  2:150009‑M1/1‑141 (MQ=255)                                                                                       agcatagatacaccaatcccctcactactcgcaatagtgaggggattggtgtatctaTGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAACAATGCAAACTCAACTCATAACTTAATAAAATGACCGacac                                                           >  2:228946‑M2/58‑141 (MQ=255)                                                                                       GCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGacac                                                           >  1:189463‑M1/1‑141 (MQ=255)                                                                                       GCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTACTGTTAACTGTATTATAACAACTTTAAAGCAAAAAAATGCAAAATAAACTAATAAATTCAAAAAATGACCgacaa                                                           <  2:228480‑M1/141‑2 (MQ=255)                                                                                             ccaatcccctcactactcgcaatagtgaggggatttttttcggtgtagctaTGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGc                                                     >  1:138811‑M2/52‑141 (MQ=255)                                                                                                   ccctcactactcgcaatagtgaggggatttttttcggtgtagctaTGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTAc                                               <  2:138811‑M2/96‑1 (MQ=255)                                                                                                             cACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTCATGTAATTACCGACACCCTCGCTTCTACTCCAATTTaa                                     <  1:308215/141‑1 (MQ=255)                                                                                                                   tcgcaatagtGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTACTCCAATTTAACAAAAt                               >  1:319423/7‑141 (MQ=255)                                                                                                                   tGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTACTCCAATTTAACAAAAt                               <  1:2185/141‑1 (MQ=255)                                                                                                                     cGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTACTCCAATTTACCAAAATAc                             >  1:179904/1‑141 (MQ=255)                                                                                                                            tGAGGGGATTGGTATATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTACTCCAATTTAACAAAATACTATATTa                      <  2:211233/141‑1 (MQ=255)                                                                                                                                 ggATTGGTTTAGCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACACCAAAAAAAAGCAAAATCAACTAATAACATAATGAAATGACCGACACCCTCGATTCTACCCCAATTTAACAAAATACTATATTAGTACt                 <  2:184700/141‑1 (MQ=255)                                                                                                                                       gtgtATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTACTCCAATTTAACAAAATACTATATTAGTACTATAttt           <  2:70696/141‑1 (MQ=255)                                                                                                                                        tgtATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACTCCCTCGCTTCTACTCCAATTTAACAAAATACTATATTAGTACTATAtttt          <  2:160999/141‑1 (MQ=255)                                                                                                                                          tATCTATGCTAATTCCCGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTACTCCAATTTAACAAAATACTATATTAGTACTATATTTTTc        <  1:361882/141‑1 (MQ=255)                                                                                                                                                tGCTAATTCCTGTTAACTGTATTATAACAACTTAACAGCTAGAAGATGCAAAATCAACTAATAAATTAATCAAATGACCGACAAAATCGCGTTTACTCCAATTTAACAAAATACTCTATTAGTACTATATTTTTCATTAAc  >  2:258031/1‑141 (MQ=255)                                                                                                                                                |                                                                                                                                             ACATTTGATGCATGTATCGTGCACTTATTTAGTGGTACTGTGTTTACGCATTGGCTACGCAAACACGATGATAAATAGGCGACCTAGCTACACCGAAAAAAATCCCCTCACTATTGCGAGTAGTGAGGGGATTGGTGTATCTATGCTAATTCCTGTTAACTGTATTATAACAACTTTACAGCAAAAAAATGCAAAATCAACTAATAAATTAATGAAATGACCGACACCCTCGCTTCTACTCCAATTTAACAAAATACTATATTAGTACTATATTTTTCATTAAC  >  USA300TCH1516_ALE/2653400‑2653683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.