New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2007531 =	45 (1.010)	3 (0.070)	3/238	NT	7.0%	intergenic (+46/‑196)	hemL2/USA300HOU_RS10115	Glutamate‑1‑semialdehyde 2,1‑aminomutase 2/hypothetical protein
	?	USA300TCH1516_ALE	2007597 =	38 (0.920)					intergenic (+112/‑130)	hemL2/USA300HOU_RS10115	Glutamate‑1‑semialdehyde 2,1‑aminomutase 2/hypothetical protein

TAAAATAAATCATACATAATACTGATAGCGATGTAAAACTTTAGTTAGAGATTAAAATAGTATAAATTTGTAAAATAAAAACTCACATAGTGACATATCAAGTTAAACGTTAATAGTTAACGATATAAAATGAATCTACTATGTGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2007677‑2007531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actatgtgagTTTTTATTTTACAAATTTATACTATTTTAATCTCTAACTAAAGTTTTACATCGCTATCAGTATTATGTATGATTTATTTTAACAACTATAAATAAGCTTGAATTTTGTAACTAGTAAGTGTATAACAGTAATGAATACG  >  USA300TCH1516_ALE/2007597‑2007735                                                                                                                                                                                                                                                                                                TAAAATAAATCATACATAATACTGATAGCGATGTAAAACTTTAGTTAGAGATTAAAATAGTATAAATTTGTAAAATAAAAACTCACATAGTGACATATCAAGTTAAACGTTAATAGTTAACGATATAAAATGAATCTACT                                                                                                                                                    >  1:83654/1‑140  AAAATAAATCATACATAATACTGATAGCGATGTAAAACTTTAGTTAGAGATTAAAATAGTATAAATTTGTAAAATAAAAACTCACATAGTGACATATCAAGTTAAACGTTAATAGTTAACGATATAAAATGAATCTACTA                                                                                                                                                   >  1:13392/1‑140    AATAAATCATACATAATACTGATAGCGATGTAAAACTTTAGTTAGAGATTAAAATAGTATAAATTTGTAAAATAAAAACTCACATAGTGACATATCAAGTTAAACGTTAATAGTTAACGATATAAAATGAATCTACTATG                                                                                                                                                 <  1:479672/140‑1     ATAAATCATACATAATACTGATAGCGATGTAAAACTTTAGTTAGAGATTAAAATAGTATAAATTTGTAAAATAAAAACTCACATAGTGACATATCAAGTTAACCGTTAATAGTTAACGATATAAAATGAATCTACTATGT                                                                                                                                                <  1:234405/140‑1     ATAAATCATACATAATACTGATAGCGATGTAAAACTTTAGTTAGAGATTAAAATAGTATAAATTTGTAAAATAAAAACTCACATAGTGACATATCAAGTTAAACGTTAATAGTTAACGATATAAAATGAATCTACTATGT                                                                                                                                                >  2:124138/1‑140      TAAATCATACATAATACTGATAGCGATGTAAAACTTTAGTTAGAGATTAAAATAGTATAAATTTGTAAAATAAAAACTCACATAGTGACATATCAAGTTAAACGTTAATAGTTAACGATATAAAATGAATCTACTATGTG                                                                                                                                               <  2:129009/140‑1             TACATAATACTGATAGCGATGTAAAACTTTAGTTAGAGATTAAAATAGTATAAATTTGTAAAATAAAAACTCACATAGTGACATAAACCACAATTTGTTTATAGTTAACGATATAAAATGAATCTACTATGTGAGTATTT                                                                                                                                        >  2:119133/1‑140                              GATGTAAAACTTTAGTTAGAGATTAAAATAGTATAAATTTGTAAAATAAAAACTCACATAGTGACATATCAAGTTAAACGTTAATAGTTAACGATATAAAATGAATCTACTATGTGAGTTTTTATTTTACAAATTTATAC                                                                                                                       >  1:426128/1‑140                                                            GTATAAATTTGTAAAATAAAAACTCACATAGTGACATATCAAGTTAAACGTTAATAGTTAACGATATAAAATGAATCTACTATGTGAGTTTTTATTTTACAAATTTATACTATTTTAATCTCTAACTAAAGTTTTACATC                                                                                         <  2:426128/140‑1                                                                               AAACTCACATAGTGACATATCAAGTTAAACGTTAATAGTTAACGATATAAAATGAATCTACTATGTGAGTTTTTATTTTACAAATTTATACTATTTTAATCTCTAACTAAAGTTTTACATCGTTATCAGTATTATGTATa                                                                      >  2:337137/1‑139                                                                                                                                             taGTGAGTTTTTATTTTACAAATTTATACTATTTTAATCTCTAACTAAAGTTTTACATCGCTATCAGTATTATGTATGATTTATTTTAACAACTATAAATAAGCTTGAATTTTGTAACTAGTAAGTGTATAACAGTAATG        >  1:468526/3‑140                                                                                                                                                TGAGTTTTTATTTTACAAATTTATACTATTTTAATCTCTAACTAAAGTTTTACATCGCTATCAGTATTATGTATGATTTATTTTAACAACTATAAATAAGCTTGAATTTTGTAACTAGTAAGTGTATAACAGTAATGAAT     <  2:333297/140‑1                                                                                                                                                TGAGGTTGTATTTTACAAATTTATACTATTTTAATCTCTAACTAAAGTTTTACATCGCTATCAGTATTATGTATGATTTATTTTAACAACTATAAATAAGCTTGAATTTTGTAACTAGTAAGTGTATAACAGTAATGAAT     <  2:36176/140‑1                                                                                                                                                   GTTTTTATTTTATAAATTTATACTATTTTAATCTCTAACTAAAGTTTTACATCGCTTTCATTATTATGTATGATTTATTTTAACAACTATAAATAAGCTTGAATTTTGTAACTATTAAGTGTATAACAGTAATAAATACt  >  2:27653/1‑139                                                                                                                                                   GTTTTTATTTTACAAATTTATACTATTTTAATCTCTAACTAAAGTTTTACATCGCTATCAGTATTATGTATGATTTATTTTAACAACTATAAATAAGCTTGAATTTTGTAACTAGTAAGTGTATAACAGTAATGAATACG  >  1:365642/1‑140                                                                                                                                                   GTTTTTATTTTACAAATTTAGACTAGTTTAATCTCTAACTAAAGTTTTACATCGCTATCAGTATTATGTATGATTTATTTTAACAACTATAAATAAGCTTGAATTTTGTAACTAGTAAGTGTATAACAGTAATGAATACG  <  2:568616/140‑1                                                                                                                                                                                                                                                                                                TAAAATAAATCATACATAATACTGATAGCGATGTAAAACTTTAGTTAGAGATTAAAATAGTATAAATTTGTAAAATAAAAACTCACATAGTGACATATCAAGTTAAACGTTAATAGTTAACGATATAAAATGAATCTACTATGTGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2007677‑2007531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actatgtgagTTTTTATTTTACAAATTTATACTATTTTAATCTCTAACTAAAGTTTTACATCGCTATCAGTATTATGTATGATTTATTTTAACAACTATAAATAAGCTTGAATTTTGTAACTAGTAAGTGTATAACAGTAATGAATACG  >  USA300TCH1516_ALE/2007597‑2007735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.