New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	22032 =	126 (0.990)	6 (0.050)	6/230	NT	5.2%	coding (489/1467 nt)	USA300HOU_pUSA300HOUMR0028	macrolide transporter
	?	CP000731	22054 =	100 (0.840)					coding (511/1467 nt)	USA300HOU_pUSA300HOUMR0028	macrolide transporter

TTTTCACTTATATACTGTTCATATTGACGTTGTTGTTCTAACTGTTCTTGTTCATATTGATTTTGATACTGTGTGTAATTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAAATTG‑TGTCAGCAATTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/22172‑22032 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatttggGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAACAAAGATTGT  >  CP000731/22054‑22183                                                                                                                                                                                                                                                                                  TTTTCACGTATATACTGTTCATATTGACGTTGTTGTTCTACCTGTTCTTGTTCATATTGATTTTGATACTGTGTGTAATTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAAATTG‑TGTCAGC                                                                                                                                           <  2:380847/134‑1  TTTCACTTATATACTGTTCATATTGACGTTGTTGTTCTAACTGTTCTTGTTCATATTGATTTTGATACTGTGTGTAATTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAAATTG‑TGTCAGCA                                                                                                                                          <  1:149672/134‑1  TTTCACTTATATACTGTTCATATTGACGTTGTTGTTCTAACTGTTCTTGTTCATATTGATTTTGATACTGTGTGTAATTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAAATTG‑TGTCAGCA                                                                                                                                          <  2:107672/134‑1  TTTCACTCATATACTGTGCATATTGACGGTGTTGTTCTAACTGTTCTTGTTCATATTGATTTTGATACTGTGTGTAATTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAAATTG‑TGTCAGCA                                                                                                                                          <  1:493075/134‑1    TCACTTATATACTGTTCATATTGACGTTGTTGTTCTAACTGTTCTTGTTCATATTGATTTTGATACTGTGTGTAATTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAAATTG‑TGTCAGCAAT                                                                                                                                        <  2:533407/134‑1     tcCTTATATTTTTTTCTTATGGACGTTGTTGTTCTAACTTTTTTTGTTCATATTTATTTTGATACTGTGTGTAATTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAAATTG‑TGTCAGCAATT                                                                                                                                       <  2:514617/132‑1      tCTTATATACTGTTCATATTGACGTTGTTGTTCTAACTGTTCTTGTTGCTGTTCACTTCAATAATGTGTGTAATTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAAATTG‑TGTCAGCAATTT                                                                                                                                      <  2:430355/133‑1      acgTATCTATTGTCCTTATTGACGTTGTTGTTCTAACTGTTCTTGTTCATATTGATTTTGATACTGTGTGTAATTACCTTTAAACACGCTTATTGTGCCATCTTCTTGTATATCCCAAATTG‑TGTCAGCAATTT                                                                                                                                      <  2:181410/131‑1      ACTTATATACTGTTCATATTGACGTTGTTGTTCTAACTGTTCTTGTTCATATTGATTTTGATACTGTGTGTAATTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAACTTG‑TTCCAGCAATTT                                                                                                                                      >  2:501399/1‑134       CTTATATTCTGTTTATATTGACGTTTTTGTTCTAACTGTTCTTGTTCATATTGATTTTGATACTGTGTGTAATTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAAATTG‑TGTCAGCAATTTG                                                                                                                                     <  2:26468/134‑1        TTATTTACTGTTCTTATTGACTTTGTTGTTCTAACTGTTCTTGTTCATATTGATTTTGATACTGTGTGTAAGTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAAATTG‑TGTCAGCAATTTGG                                                                                                                                    <  1:179731/134‑1                  TTCTTATTGACGTTGTTGTTCTATCTGTTCTTGTTCATATTGATTTTTATACTGTGTGTAATTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAAATTGCTGACA‑CAATTTGGGATATACAAG                                                                                                                          <  2:264265/134‑1                                                                TGATACTGTGTGTAATTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAAATTGCTGACA‑CAATTTGGGATCTACAAGAAGATGGCACAATAAGAGTGTTTAAAGGGAATTACACACAaaaaca                                                                            >  2:486927/1‑128                                                                       GTGTGTAATTACCTTTAAACATTCTTATCGTGCCATCTTCTTGTATATCCCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAA                                                                     <  2:513244/134‑1                                                                                            CTCTTATTGTGCCATCTTCTTGTATATCCCAAATAG‑TGTAAGCAAATTGGGATATACAAGAAGATGGCACAATAAGAGAGTTTAAAGGGAAGTACAAGCAGGAACAAAATCAATATGACGAAGAACAGTTAGAA                                                >  1:458098/1‑134                                                                                                                           AATTG‑TGTCAGCAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGAATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAACATGAACAGTATATAAGTG                 >  1:473109/1‑134                                                                                                                                 TGTCAGCAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAA            >  1:94614/1‑134                                                                                                                                   TCAGCAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAACA          >  2:194393/1‑134                                                                                                                                        AATTTTGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAGGTTCCAGAGAAACAAGATCAGTTAGAACAACAACGCCAATATGAACAGTATATAAGTGAAAAACAAAGAT     <  1:284061/134‑1                                                                                                                                        AATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAACAAAGAT     <  1:290146/134‑1                                                                                                                                         ATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAAAATGAACAGTAAATAAGTGAAAAACAAAGATT    >  2:370399/1‑134                                                                                                                                          TTTGTGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAACAAAGATTG   <  1:92710/134‑1                                                                                                                                           TTGGGATATACACGACGGTGGCAGAAGAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAACAAAGATTGT  <  2:553953/134‑1                                                                                                                                                                                                                                                                                  TTTTCACTTATATACTGTTCATATTGACGTTGTTGTTCTAACTGTTCTTGTTCATATTGATTTTGATACTGTGTGTAATTACCTTTAAACACTCTTATTGTGCCATCTTCTTGTATATCCCAAATTG‑TGTCAGCAATTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/22172‑22032 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatttggGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAACAAAGATTGT  >  CP000731/22054‑22183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.