BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	22032 =	126 (0.990)	6 (0.050)	6/230	NT	5.2%	coding (489/1467 nt)	USA300HOU_pUSA300HOUMR0028	macrolide transporter
*	?	CP000731	22054 =	100 (0.840)	6 (0.050)	6/230	NT	5.2%	coding (511/1467 nt)	USA300HOU_pUSA300HOUMR0028	macrolide transporter

Only 100 of 137 total aligned reads displayed.

AGATGAACCTACAAATCACTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAACAAAGATTGT  >  CP000731/21921‑22183

aGATTAACCTACTAATCACTTTGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTggg                                                                                                                                   <  1:358663/134‑1 (MQ=255)

aGATGAACCTACAAATCACTTTGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGGTAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTggg                                                                                                                                   <  1:579551/134‑1 (MQ=255)

   tGAACCTACAAATCACTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATGACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGata                                                                                                                                <  1:206669/134‑1 (MQ=255)

     aaCCTACAAATCACTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTTTAGACCAAATTGCTGACA‑CAATGTGGGAtata                                                                                                                              >  2:89931/1‑134 (MQ=255)

     aaCCTACAAATCACTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGAtata                                                                                                                              >  2:534026/1‑134 (MQ=255)

     aaCCTACAAATCACTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑AAATTTAGGAtata                                                                                                                              >  2:345367/1‑134 (MQ=255)

       ccTACAAATCACTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACa                                                                                                                            <  1:277130/134‑1 (MQ=255)

         tACAAATCACTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACaag                                                                                                                          <  2:308372/134‑1 (MQ=255)

         tACAAATCACTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACaag                                                                                                                          <  2:162988/134‑1 (MQ=255)

         tACAAATCACTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTAATGATAGAGCACTTATAGACTAAATTGTCGACA‑CAATTTGGCATATACaag                                                                                                                          >  1:531185/1‑134 (MQ=255)

          ttcttattgacgttgttgttctatctgttcttgttcatattgatttttatactgtgtgtaattacctttaaacactcttattgtgccatcttcttgtatatcccaaattgctgacacaatttggGATATACaag                                                                                                                          <  2:264265‑M2/10‑1 (MQ=255)

             aaTCACTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAagaaga                                                                                                                      >  1:513129/1‑134 (MQ=255)

             aaTCACTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGAATATACAagaaga                                                                                                                      >  1:179106/1‑134 (MQ=255)

             aaTCACTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATATGGGATATACAagaaga                                                                                                                      >  2:160640/1‑134 (MQ=255)

              aTCACTTGGATAAAATTGGTAAAGATTTTCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGAt                                                                                                                     >  1:81304/1‑134 (MQ=255)

                 aCTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGc                                                                                                                  >  2:23885/1‑134 (MQ=255)

                  cTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGAca                                                                                                                 >  1:112215/1‑134 (MQ=255)

                  cTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAAATTGAGATATACAAGAAGATggaa                                                                                                                 >  2:44079/1‑132 (MQ=255)

                   ttGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAATTATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATGGCTGACA‑CAATTTGGGATATACAAGAAGATGGcac                                                                                                                <  1:266536/134‑1 (MQ=255)

                   ttGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTCATTATAGTAAGTCATGATAGAGCACTCATAGGCCAAATTACTGACA‑CAATTTGGAATACACAAGAATATGGaac                                                                                                                >  2:182256/1‑134 (MQ=255)

                    tGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGcaca                                                                                                               >  1:236968/1‑134 (MQ=255)

                     ggATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACaa                                                                                                              <  2:148629/134‑1 (MQ=255)

                          aaaTTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAaga                                                                                                         <  2:60272/134‑1 (MQ=255)

                          aaaTTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAaga                                                                                                         <  1:65159/134‑1 (MQ=255)

                           ttctaactgttcttcgtcatattgattttgttcctgcttgtacttccctttaaactctcttattgtgccatcttcttgtatatcCCAATTTGCTTACA‑CTATTTGGGATATACAAGAAGATGGCACAATAagag                                                                                                        >  1:458098‑M1/85‑134 (MQ=255)

                            aTTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAAGTTGGGATATACAAGAAGATGGCACAATCAGCgt                                                                                                       >  2:341508/1‑134 (MQ=255)

                             ttcgTAAAGATTATCTGAAAAATATTTTAAAATATTACGATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCATATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAgtg                                                                                                      <  2:518006/131‑1 (MQ=255)

                               ggTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAgtgtg                                                                                                    >  2:159810/1‑133 (MQ=255)

                               ggTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGATGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGtt                                                                                                    >  1:148512/1‑134 (MQ=255)

                                gTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGttt                                                                                                   <  2:49969/134‑1 (MQ=255)

                                    aGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTATTTATAGTAAATCATGATAGATCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAg                                                                                               <  1:113252/134‑1 (MQ=255)

                                           cTGAAAAATATTTTAAAATATTAATATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTa                                                                                        <  1:428690/134‑1 (MQ=255)

                                                aaaTATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTacacac                                                                                   <  2:181475/134‑1 (MQ=255)

                                                 aaTATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTAcacaca                                                                                  >  2:69344/1‑134 (MQ=255)

                                                  atagTTTAAAAGAGTACGATGGTAGTGTAATTATAGTAAGTCATGATAGAGGAGTTATAGACCAAATTGCTGACA‑CAAGTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAg                                                                                 <  1:516528/134‑1 (MQ=255)

                                                   tatTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAACACTTATAGACGAAATTGCTGACA‑CACTTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGt                                                                                >  2:34635/1‑134 (MQ=255)

                                                    atTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTa                                                                               >  1:100/1‑134 (MQ=255)

                                                       ttAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCa                                                                            >  2:345176/1‑134 (MQ=255)

                                                       ttAAAATATTACTATGGTACTTTAATTATAGGAAGTCATGATAGAGCACTTATAGACCAAAGTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCa                                                                            <  1:523020/134‑1 (MQ=255)

                                                        tgatactgtgtgtaattacctttaaacactcttattgtgccatcttcttgtatatcccaaattgctgacacaatttggGATCTACAAGAAGATGGCACAATAAGAGTGTTTAAAGGgaattacacacaaaaaca                                                                            >  2:486927‑M2/79‑128 (MQ=255)

                                                        tAACATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCaa                                                                           <  2:339947/134‑1 (MQ=255)

                                                        tAAAATGTTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCaa                                                                           <  2:448591/134‑1 (MQ=255)

                                                        tAAAATATTATTATTGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAAGAAGAGTGTTTAAAGGTAATTACACACAGTATCaa                                                                           <  2:148529/134‑1 (MQ=255)

                                                        tAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCaa                                                                           <  2:28736/134‑1 (MQ=255)

                                                        tAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCaa                                                                           <  2:366111/134‑1 (MQ=255)

                                                          aaaTATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACAAAGTATCaaaa                                                                         >  2:401672/1‑134 (MQ=255)

                                                           aaTATTACTACGGTACTCTAAACAAAGTAAGTCATGATAGAGCACTTACAGCCCAGATTGCTGACA‑CAATTGGGTATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCaaact                                                                        <  1:19463/134‑3 (MQ=255)

                                                              atTACTATGGTACTTTAATTATAGTAAGTCATGATAGCGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAAATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCaa                                                                     >  1:333440/1‑134 (MQ=255)

                                                              atTACTATGGTACGTTAGTGATAGTTAGGCATTATAGAGCACTTATAGACAAAATTGCTGACA‑CAATTTGGGATATAGAAGAAGATGGCAGAATAAGAGTGTTTAAAGGTAATTACACAC‑GTATCAAAATCAat                                                                    >  2:530314/1‑134 (MQ=255)

                                                               gtgtgtaattacctttaaacattcttatcgtgccatcttcttgtatatcccaaattgctgacacaatttggGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCaa                                                                     <  2:513244‑M2/63‑1 (MQ=255)

                                                                tACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGCCA‑CAATTGGTGGTATTTTCGCAGATAGAACAAGAAGAGTGTTTAAAGGTAATTACACACAGTATCACACTCAata                                                                   >  2:271435/1‑134 (MQ=255)

                                                                tACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTAAAGACCAAATTGCTAAAA‑CAATTCGGCAGAGACAAGAAGATAGCACAATAAAAGCGACTAAAGGTAATTAAAAACAACATCAAAATaaaca                                                                   >  2:150475/1‑132 (MQ=255)

                                                                 aCTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGAACAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAatat                                                                  <  1:345917/134‑1 (MQ=255)

                                                                       gTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTAGGGATAGACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACaa                                                            >  2:243815/1‑134 (MQ=255)

                                                                        tACTTTAATTATAGTAAGTCATGTTAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAg                                                           <  1:47822/134‑1 (MQ=255)

                                                                        tACTTTAATTATAGTAAGTCATGATAGAGCACTTTTAGATCAAATTGCGGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAg                                                           <  1:47066/134‑1 (MQ=255)

                                                                         aCTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGa                                                          <  1:478943/134‑1 (MQ=255)

                                                                              aaTTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGt                                                     <  2:436418/134‑1 (MQ=255)

                                                                              aaTTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTGGGGATATAAAAGAATAGGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGt                                                     >  2:39301/1‑134 (MQ=255)

                                                                                   taGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGaa                                                <  2:81304/134‑1 (MQ=255)

                                                                                    ctcttattgtgccatcttcttgtatatcccaaatagtgtaagcaaattggGATATACAAGAAGATGGCACAATAAGAGAGTTTAAAGGGAAGTACAAGCAGGAACAAAATCAATATGACGAAGAACAGTTAGaa                                                >  1:458098‑M2/51‑134 (MQ=255)

                                                                                    aGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACATACAGTATTAAAATAAATATGAACAAGAACAGTTAGaac                                               >  1:591899/1‑134 (MQ=255)

                                                                                    aGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGaac                                               <  2:112499/134‑1 (MQ=255)

                                                                                     gTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAAAGTGTTTAAAGGTAATTACACACAGTATCAAAATGAATGTGAACAAGAACAGATAGaaca                                              >  2:393167/1‑134 (MQ=255)

                                                                                      tAAGTCATGATAGAGCACTTATAGACCAAATTGGTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGaacaa                                             <  2:416240/134‑1 (MQ=255)

                                                                                       aaGTAATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGaacaac                                            <  1:548470/134‑1 (MQ=255)

                                                                                       aaGACAAGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGaacaac                                            <  1:238703/134‑1 (MQ=255)

                                                                                        aGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGaacaaca                                           <  2:262337/134‑1 (MQ=255)

                                                                                         ggcATGATAGAGCACTTATAGACCAAAGTTCTGACA‑CAATTTCGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGaacaacaa                                          <  2:545674/132‑1 (MQ=255)

                                                                                           cATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACGCGGACGTAAAAGCAATATGAACAAGAACAGTTAGAACAACAACg                                        >  2:587542/1‑134 (MQ=255)

                                                                                           cATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGCGTTTAAAGGTAATTACACACAGTAACAAACTTATTATGAACAAGAACAGTTAGAACAACAACg                                        >  2:586522/1‑134 (MQ=255)

                                                                                            aTGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGt                                       <  1:165904/134‑1 (MQ=255)

                                                                                               aTAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCaa                                    <  1:595137/134‑1 (MQ=255)

                                                                                                gagatCACTTAAAAACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAat                                   <  2:494298/133‑1 (MQ=255)

                                                                                                 agagCACTTATAGACCAAATTTCTGACA‑CATTTTGGGATATACATGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAata                                  <  1:236022/134‑1 (MQ=255)

                                                                                                 agagCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAata                                  <  1:565247/134‑1 (MQ=255)

                                                                                                   agCACTTATAGACTAAAGTGCTGACA‑CAATTTGGGATATAAAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATg                                <  2:494065/134‑1 (MQ=255)

                                                                                                   agCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATg                                <  1:49763/134‑1 (MQ=255)

                                                                                                     cttgtatatcCCAAATTG‑TGTCAGCAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATAAAAATCAATATGAACAAGAACAGATAGAACAACAACGTCAATAAGaa                              <  2:264265‑M1/124‑1 (MQ=255)

                                                                                                       cTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACa                            <  1:146936/134‑1 (MQ=255)

                                                                                                           taGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGtat                        >  2:36453/1‑134 (MQ=255)

                                                                                                           taGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAAACGGAAGAGTTAGAACAACAACGTCAACAAGAACAgaaa                        >  2:587144/1‑131 (MQ=255)

                                                                                                               CCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTACTTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAAAGTCAATAAGAACAGTAAATaa                    <  1:179731‑M1/134‑1 (MQ=255)

                                                                                                                 AAATTGCTGGAA‑CAAGTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGt                  >  2:501399‑M1/1‑134 (MQ=255)

                                                                                                                 AAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACATTATTGAAGTGAACAGCAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAaga                  <  2:430355‑M1/134‑2 (MQ=255)

                                                                                                                  AATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATAAATATGAACAAAAAAAGTTAGAACAACAACGTCCATAAGAAAAAAATATaagga                 <  2:514617‑M1/134‑3 (MQ=255)

                                                                                                                   aattgtgtcagcaatttggGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGAATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAACATGAACAGTATATAAGTg                 >  1:473109‑M2/20‑134 (MQ=255)

                                                                                                                   ATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGa                <  2:533407‑M1/134‑1 (MQ=255)

                                                                                                                     TGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGaaa              <  2:107672‑M1/134‑1 (MQ=255)

                                                                                                                     TGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGaaa              <  1:149672‑M1/134‑1 (MQ=255)

                                                                                                                        tGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAAc           <  1:533407/134‑1 (MQ=255)

                                                                                                                        tGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAAc           >  1:349007/1‑134 (MQ=255)

                                                                                                                         taca‑cAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAACa          <  1:466710/133‑1 (MQ=255)

                                                                                                                         gACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAACGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTAAATATGAACAGAATATAAGAGAAAAACa          >  1:329835/1‑134 (MQ=255)

                                                                                                                          tcagcaatttggGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAACa          >  2:194393‑M2/13‑134 (MQ=255)

                                                                                                                               aattttgGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAGGTTCCAGAGAAACAAGATCAGTTAGAACAACAACGCCAATATGAACAGTATATAAGTGAAAAACAAAGAt     <  1:284061‑M2/127‑1 (MQ=255)

                                                                                                                                atttggGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAAAATGAACAGTAAATAAGTGAAAAACAAAGAtt    >  2:370399‑M2/7‑134 (MQ=255)

                                                                                                                                atttaagATATACAACAAGATAGCACAATAATAGTGTTTAAAAGTAATTACACACAGTATCAAAATCAATATAAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAACAAAGAtt    <  2:591899/128‑1 (MQ=255)

                                                                                                                                 tttgtGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAACAAAGATTg   <  1:92710‑M2/129‑1 (MQ=255)

                                                                                                                                  ttggGATATACACGACGGTGGCAGAAGAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAACAAAGATTGt  <  2:553953‑M2/130‑1 (MQ=255)

AGATGAACCTACAAATCACTTGGATAAAATTGGTAAAGATTATCTGAAAAATATTTTAAAATATTACTATGGTACTTTAATTATAGTAAGTCATGATAGAGCACTTATAGACCAAATTGCTGACA‑CAATTTGGGATATACAAGAAGATGGCACAATAAGAGTGTTTAAAGGTAATTACACACAGTATCAAAATCAATATGAACAAGAACAGTTAGAACAACAACGTCAATATGAACAGTATATAAGTGAAAAACAAAGATTGT  >  CP000731/21921‑22183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.