mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 512,643 | 0 | A | G | 49.2% | 7.1 / inf | 251 | intergenic (+711/‑6052) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| * | USA300TCH1516_ALE | 111,516 | 0 | C | A | 40.0% | 206.6 / 207.0 | 192 | Q196K (CAA→AAA) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 111,512 | 0 | A | G | 38.5% | 148.4 / 189.4 | 196 | S194S (TCA→TCG) | USA300HOU_RS00520 | putative lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 208 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 234750 | 134 (1.180) | 10 (0.100) | 10/248 | 12.2 | 7.6% | intergenic (+48/+217) | USA300HOU_RS01045/gsiA | hypothetical protein/Glutathione import ATP‑binding protein GsiA |
| ? | USA300TCH1516_ALE | = 234763 | 118 (1.130) | intergenic (+61/+204) | USA300HOU_RS01045/gsiA | hypothetical protein/Glutathione import ATP‑binding protein GsiA | |||||
| * | ? | USA300TCH1516_ALE | 1205383 = | 121 (1.070) | 58 (0.630) +25 bp |
7/218 | 12.7 | 44.9% | intergenic (‑264/‑305) | USA300HOU_RS15290/lspA | hypothetical protein/Lipoprotein signal peptidase |
| ? | USA300TCH1516_ALE | 2478476 = | 54 (0.480) | intergenic (+363/‑212) | USA300HOU_RS12760/USA300HOU_RS12765 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 1245321 = | 88 (0.780) | 9 (0.090) | 9/250 | 12.9 | 10.0% | intergenic (+126/‑117) | fabG/acpP | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase FabG/Acyl carrier protein |
| ? | USA300TCH1516_ALE | 1245355 = | 80 (0.760) | intergenic (+160/‑83) | fabG/acpP | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase FabG/Acyl carrier protein | |||||
| * | ? | USA300TCH1516_ALE | 1205383 = | 121 (1.070) | 52 (0.560) +25 bp |
6/218 | 13.3 | 43.1% | intergenic (‑264/‑305) | USA300HOU_RS15290/lspA | hypothetical protein/Lipoprotein signal peptidase |
| ? | USA300TCH1516_ALE | 1426741 = | 48 (0.420) | intergenic (‑472/+500) | pstS/cvfB | Phosphate‑binding protein PstS/Conserved virulence factor B | |||||
| * | ? | USA300TCH1516_ALE | 1217678 = | 99 (0.870) | 8 (0.080) | 7/236 | 13.5 | 8.1% | intergenic (+7/‑430) | USA300HOU_RS06060/USA300HOU_RS06065 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1217746 = | 94 (0.940) | intergenic (+75/‑362) | USA300HOU_RS06060/USA300HOU_RS06065 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 1885475 = | 121 (1.070) | 9 (0.080) | 8/252 | 13.6 | 7.1% | intergenic (‑257/+69) | ebh_2/moeZ_2 | Extracellular matrix‑binding protein ebh/putative adenylyltransferase/sulfurtransferase MoeZ |
| ? | USA300TCH1516_ALE | 1885505 = | 121 (1.140) | intergenic (‑287/+39) | ebh_2/moeZ_2 | Extracellular matrix‑binding protein ebh/putative adenylyltransferase/sulfurtransferase MoeZ | |||||
| * | ? | USA300TCH1516_ALE | 93343 = | 121 (1.070) | 8 (0.070) | 8/256 | 13.7 | 6.4% | coding (292/1068 nt) | glpE | Thiosulfate sulfurtransferase GlpE |
| ? | USA300TCH1516_ALE | = 93339 | 117 (1.080) | coding (288/1068 nt) | glpE | Thiosulfate sulfurtransferase GlpE | |||||
| * | ? | USA300TCH1516_ALE | = 2731894 | 109 (1.030) | 10 (0.100) +ATTATAAACA |
6/230 | 13.9 | 8.4% | intergenic (‑22/‑111) | USA300HOU_RS14060/cocE | hypothetical protein/Cocaine esterase |
| ? | USA300TCH1516_ALE | 2731895 = | 118 (1.040) | intergenic (‑23/‑110) | USA300HOU_RS14060/cocE | hypothetical protein/Cocaine esterase | |||||
| * | ? | USA300TCH1516_ALE | 2622923 = | 141 (1.240) | 7 (0.070) | 7/250 | 14.1 | 5.0% | intergenic (‑253/+131) | USA300HOU_RS13520/USA300TCH1516_02501 | hypothetical protein/Putative surface protein |
| ? | USA300TCH1516_ALE | 2622970 = | 134 (1.270) | intergenic (‑300/+84) | USA300HOU_RS13520/USA300TCH1516_02501 | hypothetical protein/Putative surface protein | |||||
| * | ? | USA300TCH1516_ALE | = 1856676 | 110 (0.970) | 7 (0.060) | 7/256 | 14.3 | 6.4% | intergenic (‑361/+339) | aroF/USA300HOU_RS09235 | Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase/hypothetical protein |
| ? | USA300TCH1516_ALE | 1856683 = | 101 (0.930) | intergenic (‑368/+332) | aroF/USA300HOU_RS09235 | Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase/hypothetical protein | |||||