| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1980867 = | 59 (0.900) | 4 (0.070) | 4/238 | NT | 6.5% | intergenic (‑109/+70) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1980913 = | 61 (1.010) | intergenic (‑155/+24) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein | |||||
ATTTTCGGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGT‑TTCGAGAGGTGAGGCATCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1981014‑1980867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAAT > USA300TCH1516_ALE/1980913‑1981047 acTTTCGGTACTTCGAAAGTGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGT‑TTCGAGAGGTGAGGCA < 2:731074/138‑1 ttgcgGGTATTGCTAAAATGAGCTAAGATTAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATAGCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGT‑TTCGAGAGGTGAGGCAT < 2:65188/135‑1 TTCGGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGT‑TTCGAGAGGTGAGGCATCG < 1:233685/140‑1 TTCAGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGT‑TTCGAGAGGTGAGGCATCG < 1:33205/140‑1 CGGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATCCTTTTAATAAATAATAAAAGCGATGTAGCTTA‑CTGTGTGGGAGAGGTGAGGCATCGCT > 1:334724/1‑140 CGGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGT‑TTCGAGAGGTGAGGCATCGCT > 1:15542/1‑140 aGTAATTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGT‑TTCGAGAGGTGAGGCATCGCTT < 1:405324/139‑1 GGTACCTCTAAAATGAGAGAAGCTGAAACATACTTTCACAGAAATGCTCAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGT‑TTCGAGAGGTGAGGCATCGCTT < 1:257504/140‑1 AGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAACGATGTAACACACCAGT‑ATAGAGAGGTGAGGCATTGATATTATTATTTAATAAAAG > 1:487759/1‑140 CTTTTAATAAATAATAAAAGCGATGTAACACACCTGT‑TTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCT < 2:487759/140‑1 AAAAGCGATGTAACACACCTGT‑TTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTA > 1:725581/1‑140 GCGATGTAACACACCTGT‑TTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGA > 1:713480/1‑140 cttctCTTTTATTATTTATTATAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGA < 2:126897/135‑1 aATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGA < 1:718883/139‑1 CATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGA > 1:471745/1‑140 CATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGA < 1:209921/140‑1 CATCGCGTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGA < 1:255735/140‑1 TCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATA < 1:69878/140‑1 CTTTTATTATGTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAAT < 1:22930/140‑1 ATTTTCGGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGT‑TTCGAGAGGTGAGGCATCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1981014‑1980867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAAT > USA300TCH1516_ALE/1980913‑1981047 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |