New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1980867 =	59 (0.900)	4 (0.070)	4/238	NT	6.5%	intergenic (‑109/+70)	USA300HOU_RS09865/USA300HOU_RS09870	hypothetical protein/hypothetical protein
	?	USA300TCH1516_ALE	1980913 =	61 (1.010)					intergenic (‑155/+24)	USA300HOU_RS09865/USA300HOU_RS09870	hypothetical protein/hypothetical protein

CAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAATATTGC  >  USA300TCH1516_ALE/1980778‑1981052                                                                                                                                         |                                                                                                                                            cataaTAGCTATTCATTATACCACTATTTTTATTTTTTATTTCATTAATCATTTCACTTTCTCCTCAATTTATTATAAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGAGAGATAAAACGATtttattat                                                                                                                                         <  2:538176/136‑1 (MQ=255) caacaTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTtttattat                                                                                                                                         <  2:329582/140‑1 (MQ=255) aaacaTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATTCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTtttattat                                                                                                                                         <  2:517749/139‑1 (MQ=255)  aacaTTGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTCTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTtttattatt                                                                                                                                        <  2:10994/140‑1 (MQ=255)   acaTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTtttattattt                                                                                                                                       <  2:281435/140‑1 (MQ=255)      tAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTtttattatttatt                                                                                                                                    <  1:325981/140‑1 (MQ=255)        gTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGTTTTTATTTTTTATTaa                                                                                                                                  >  2:384022/1‑140 (MQ=255)           agaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAg                                                                                                                               <  2:487759‑M1/61‑1 (MQ=255)            agaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataataaaaacgatgtaacacaccagtatagagaggtgaggcattgatattATTATTTAATAAAAg                                                                                                                               >  1:487759‑M2/126‑140 (MQ=255)             tCATTATACTACTATTGTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTCACATCGCTTTTATTATTTATTAAAAGta                                                                                                                             <  2:237856/140‑1 (MQ=255)                ttATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTCTTATTTATTAAAAGtatat                                                                                                                          >  1:746491/1‑140 (MQ=255)                ttATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatat                                                                                                                          >  1:743385/1‑140 (MQ=255)                ttATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTCCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCGCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtagat                                                                                                                          <  1:179662/140‑1 (MQ=255)                 tataCCACTATTTTTATTTTTTAAGTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatata                                                                                                                         <  1:364773/140‑1 (MQ=255)                  ataCCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTTAAAGTATATAg                                                                                                                        >  1:687462/1‑140 (MQ=255)                      cACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCt                                                                                                                    <  1:97797/140‑1 (MQ=255)                      cACTATTTCTATTTTTTAAGTCATTAATCATTTCACTTTCTGCTCACTTTATTATTAGTTTACATACAAAAAGCGACGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCt                                                                                                                    <  2:562985/140‑1 (MQ=255)                                atttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTAc                                                                                                          >  1:608258/1‑140 (MQ=255)                                atttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTAc                                                                                                          >  1:242057/1‑140 (MQ=255)                                atttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTAc                                                                                                          >  2:69878/1‑140 (MQ=255)                                 ttttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAATCAGCGATGCCTCACCTCTCGAA‑TCTTGTGTGTTACATCGCTTTTATTATTTTTTCATTCTTTATATGTCTATTTATGTACt                                                                                                         >  2:598829/1‑140 (MQ=255)                                 ttttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt                                                                                                         <  1:383756/140‑1 (MQ=255)                                 ttttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt                                                                                                         <  1:383754/140‑1 (MQ=255)                                  ttttttATCCATTAATCATTTCACTTTCTGCTCAATTTATCCCTTATATACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTa                                                                                                        <  2:357935/140‑1 (MQ=255)                                  tttttAATTCATTAATCATCTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTa                                                                                                        <  1:567141/140‑1 (MQ=255)                                               aaTCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc                                                                                           <  2:608258/140‑1 (MQ=255)                                               aaTCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc                                                                                           <  2:37874/140‑1 (MQ=255)                                                    tttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTATCATTTc                                                                                      >  2:558737/1‑140 (MQ=255)                                                     ttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTACTTCTTCTTTAGCATTTCt                                                                                     >  1:262714/1‑140 (MQ=255)                                                     ttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCt                                                                                     >  1:140379/1‑140 (MQ=255)                                                     ttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCt                                                                                     >  2:775731/1‑140 (MQ=255)                                                      tCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGCTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTg                                                                                    >  2:649830/1‑140 (MQ=255)                                                        aCTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGtt                                                                                  >  2:796861/1‑140 (MQ=255)                                                         cTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTa                                                                                 >  1:35155/1‑140 (MQ=255)                                                             cTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGt                                                                             >  2:415021/1‑140 (MQ=255)                                                               gCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTCAAATATATCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTAt                                                                           <  1:588073/140‑1 (MQ=255)                                                                 tCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGt                                                                         >  1:233964/1‑140 (MQ=255)                                                                 tCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGt                                                                         >  1:232938/1‑140 (MQ=255)                                                                 tCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCCAA‑ACAGCTGTGTTACCTCGCTTTTATTATTTATTAAAAGTCTATAGGCCTAGACATGTACTAATTCTTCTTTAGCACTTCTGCTCACGTATgc                                                                         >  2:761945/1‑139 (MQ=255)                                                                           cttttattaaataatAATATCAATGCCTCACCTCTCTAT‑ACTGGTGTGTTACATCGTTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtct                                                               >  1:487759‑M1/16‑140 (MQ=255)                                                                            ttaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTAGTAATTCTTCTTTAGCATTTATGTTAAAGTATGTTTCAGCTtctc                                                              >  1:625386/1‑140 (MQ=255)                                                                            ttaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctc                                                              <  1:477530/140‑1 (MQ=255)                                                                            cttttaataaataataaaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtct                                                               <  2:487759‑M2/79‑1 (MQ=255)                                                                             taGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctct                                                             >  2:618673/1‑140 (MQ=255)                                                                             taGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGGGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctct                                                             <  2:116189/140‑1 (MQ=255)                                                                              aGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctctc                                                            <  2:17027/140‑1 (MQ=255)                                                                                     atacaAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAg                                                     >  1:55496/1‑140 (MQ=255)                                                                                     atacaAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAg                                                     >  1:712236/1‑140 (MQ=255)                                                                                           aaaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTa                                                >  1:725581‑M2/47‑140 (MQ=255)                                                                                            AAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAATTact                                              <  1:405324‑M1/140‑2 (MQ=255)                                                                                            AAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTGAGCATTTCTGTGAAAGTATGTTTCAGCTTCTCTCATTTTAGAGGTAcc                                              <  1:257504‑M1/140‑1 (MQ=255)                                                                                             AGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCg                                             >  1:15542‑M1/1‑140 (MQ=255)                                                                                             AGCGATGCCTCACCTCTCCCACACAG‑TAAGCTACATCGCTTTTATTATTTATTAAAAGGATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCg                                             >  1:334724‑M1/1‑140 (MQ=255)                                                                                               gcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGa                                            >  1:713480‑M2/43‑140 (MQ=255)                                                                                               CGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACTGaa                                           <  1:33205‑M1/140‑1 (MQ=255)                                                                                               CGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGaa                                           <  1:233685‑M1/140‑1 (MQ=255)                                                                                                 ATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGCTATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTAATCTTAGCTCATTTTAGcaatacccgcaa                                         <  2:65188‑M1/140‑6 (MQ=255)                                                                                                  TGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCACTTTCGAAGTACcgaaagt                                        <  2:731074‑M1/140‑3 (MQ=255)                                                                                                     ctctcttctcGAA‑ACAGGTGTGTTACATCGTTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAAttgg                                     <  2:498624/134‑1 (MQ=255)                                                                                                      tCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAAttggt                                    <  1:548793/140‑1 (MQ=255)                                                                                                          ctctCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATtggttggt                                <  1:277043/140‑1 (MQ=255)                                                                                                           tctcGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTggttggtt                               <  2:416628/140‑1 (MQ=255)                                                                                                            ctcGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGCAGTACCGAAACTTGGTTGGTTa                              >  1:558555/1‑140 (MQ=255)                                                                                                            ctcGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTa                              >  1:558557/1‑140 (MQ=255)                                                                                                            ctcGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTa                              >  1:558556/1‑140 (MQ=255)                                                                                                            ctcGAA‑ACAGGTGTGTTACATCGCTGTTATTATTGATCAAAAGTAGATAGGACTAGATATGTACTAAGTCTTCTGTAGCAGTGCGGTTAAAGTATGTTTAAGCGTCTCTGATGTTAGAAGTAACGAAAATGGGTGGGCTa                              >  1:558551/1‑140 (MQ=255)                                                                                                              ctaa‑aCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATc                            <  2:111037/138‑1 (MQ=255)                                                                                                              cGAA‑ACAGTTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATc                            <  2:429531/140‑1 (MQ=255)                                                                                                              cGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATACGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATCTTAGAAGTACCGAAAAATAGTTGCTTATc                            >  2:595475/1‑140 (MQ=255)                                                                                                                 a‑aCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTgg                         >  2:669311/1‑140 (MQ=255)                                                                                                                 a‑aCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAGTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTgg                         <  2:285263/140‑1 (MQ=255)                                                                                                                   aCATGTGTGTTACATCTCTTTTATTATTGATTAAAAGTATATAGGCTTTGATATGTTTTTATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATGTTAGAAGTACCGAAAATTGGTTGGTTATCTGGa                        <  1:654993/140‑1 (MQ=255)                                                                                                                   aCAGGTGTGTTACCTCGTTTTTATTATTTATTAAAAGTATATATGTATAGGTATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTaaatcgt                        <  2:102960/140‑7 (MQ=255)                                                                                                                   aCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTCATTTTGCTGTAGCATTTTTGATACTAGAGGACTCAGCTGCTCTCATTTTAGAAGTACCGAAAATTGGTGGGTTATCTggc                        >  1:760517/1‑139 (MQ=255)                                                                                                                   aCAGGTGTGTTACATCGCTAATATAATTTATTAAGAGTATGTAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGa                        >  1:34460/1‑140 (MQ=255)                                                                                                                       gtgtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTACAGTATGTTTCAGCTTCTCTCATTTTAGACGTACCGCACATTGGTTGGTTATCTGGATTTa                    >  2:41808/1‑140 (MQ=255)                                                                                                                       gtgtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTa                    >  2:346643/1‑140 (MQ=255)                                                                                                                        tgtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTaa                   <  2:53119/140‑1 (MQ=255)                                                                                                                          tgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATa                 >  2:684090/1‑140 (MQ=255)                                                                                                                               cttctcttttATTATTTATTATAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGa            <  2:126897‑M2/130‑1 (MQ=255)                                                                                                                               catcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGa            <  1:209921‑M2/130‑1 (MQ=255)                                                                                                                               catcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGa            >  1:471745‑M2/11‑140 (MQ=255)                                                                                                                               catcgcgtttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGa            <  1:255735‑M2/130‑1 (MQ=255)                                                                                                                               aatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGa            <  1:718883‑M2/130‑1 (MQ=255)                                                                                                                                 tcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATa          <  1:69878‑M2/132‑1 (MQ=255)                                                                                                                                    cttttATTATGTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAat       <  1:22930‑M2/135‑1 (MQ=255)                                                                                                                                         attatttattaAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAATATTGc  >  1:721938/1‑140 (MQ=255)                                                                                                                                         |                                                                                                                                            CAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAA‑ACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAATATTGC  >  USA300TCH1516_ALE/1980778‑1981052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.