New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1980867 =	59 (0.900)	4 (0.070)	4/238	NT	6.5%	intergenic (‑109/+70)	USA300HOU_RS09865/USA300HOU_RS09870	hypothetical protein/hypothetical protein
	?	USA300TCH1516_ALE	1980913 =	61 (1.010)					intergenic (‑155/+24)	USA300HOU_RS09865/USA300HOU_RS09870	hypothetical protein/hypothetical protein

TCATAAATATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAG  >  USA300TCH1516_ALE/1980728‑1981001                                                                                                                                            |                                                                                                                                       tCATAAATATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACaa                                                                                                                                        <  2:289745/140‑1 (MQ=255)  cATAAATATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACaaa                                                                                                                                       >  1:134659/1‑140 (MQ=255)  cATAAATATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACaaa                                                                                                                                       <  1:576143/140‑1 (MQ=255)    tAAATATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACaaaaa                                                                                                                                     >  2:383756/1‑140 (MQ=255)    tAAATATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACaaaaa                                                                                                                                     >  2:383754/1‑140 (MQ=255)     atttatcgtgtattaaatccagataaccaaccaattttcggtacttctaaaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaatacataatAAAAg                                                                                                                                    <  1:22930‑M1/5‑1 (MQ=255)     aaaTATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTTTTATTAGTTTACATACaacatg                                                                                                                                    >  2:22930/1‑136 (MQ=255)      aaTATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGc                                                                                                                                   <  2:738908/140‑1 (MQ=255)        tatcgtgtattaaatccagataaccaaccaattttcggtacttctaaaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGa                                                                                                                                 <  1:69878‑M1/8‑1 (MQ=255)          tcgtgtattaaatccagataaccaaccaattttcggtacttctaaaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAACGCGATg                                                                                                                               <  1:255735‑M1/10‑1 (MQ=255)          tcgtgtattaaatccagataaccaaccaattttcggtacttctaaaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGatt                                                                                                                               <  1:718883‑M1/10‑2 (MQ=255)          tcgtgtattaaatccagataaccaaccaattttcggtacttctaaaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATg                                                                                                                               >  1:471745‑M1/131‑140 (MQ=255)          tcgtgtattaaatccagataaccaaccaattttcggtacttctaaaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATg                                                                                                                               <  1:209921‑M1/10‑1 (MQ=255)          tcgtgtattaaatccagataaccaaccaattttcggtacttctaaaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttataataaataataaaagagaag                                                                                                                               <  2:126897‑M1/10‑6 (MQ=255)            ataataAATAGGGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGcc                                                                                                                             <  2:601654/140‑1 (MQ=255)             taataaATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTTTTAGTTTACATACAACAAGCGCTGCCt                                                                                                                            >  1:412753/1‑140 (MQ=255)                taagtaGTGCATTCATAATTTTGATTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCAc                                                                                                                         <  1:125753/140‑1 (MQ=255)                 aaataGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTTAATTTTTTTTTAGTTTTCATACAAAAAGCTATTCCTCTcc                                                                                                                        >  2:548793/1‑140 (MQ=255)                     aGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCtctc                                                                                                                    >  1:429531/1‑140 (MQ=255)                     aGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCAATTTCTGTTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCtctc                                                                                                                    >  1:111037/1‑140 (MQ=255)                       tGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCCCTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGa                                                                                                                  <  1:795891/140‑1 (MQ=255)                       tGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCCATTCACTCTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGa                                                                                                                  <  2:608544/140‑1 (MQ=255)                         cATTCATAATTTTGACTCCTTTGTGACAACATAGTTACTCATTATCCCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGATCAATTTATTATTTGTTTAGATACAAACAGCAATGTCTCACctctggtcc                                                                                                                >  2:64587/1‑135 (MQ=255)                          aTTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAAc                                                                                                               <  2:547193/140‑1 (MQ=255)                               tAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTCTTCTTAGTTTACATCCAAAAAGCGATGCCTCACCTCTCGAAACAGgta                                                                                                          >  1:285263/1‑139 (MQ=255)                                aaTTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGACTCACCTCTCAAAACAGgtgt                                                                                                         >  2:291972/1‑140 (MQ=255)                                aaTTTTGACTCCTTTGTGACAACATAGCTATTCAAAATAGTAATAAATAGTTTATTGCCTCCCAACCTGATTGGACTTTCTGCTCAATTTATTTTTAGATTACATACTAAAAGCGATGACTCACCACTCGAAGCAGgtgt                                                                                                         >  1:187663/1‑140 (MQ=255)                                  ttttGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGgtgtgt                                                                                                       >  1:239660/1‑140 (MQ=255)                                    ttGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATCCCTCCCCTCTCGAAACAGGTGTGttg                                                                                                     >  1:126897/1‑139 (MQ=255)                                        cTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATc                                                                                                 <  1:268975/140‑1 (MQ=255)                                          tcggtacttctaaaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGc                                                                                               >  1:713480‑M1/99‑140 (MQ=255)                                              tacttctaaaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCtttt                                                                                           >  1:725581‑M1/95‑140 (MQ=255)                                                   cataaTAGCTATTCATTATACCACTATTTTTATTTTTTATTTCATTAATCATTTCACTTTCTCCTCAATTTATTATAAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGAGAGATAAAACGATtttattat                                                                                      <  2:538176/136‑1 (MQ=255)                                                   caacaTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat                                                                                      <  2:329582/140‑1 (MQ=255)                                                   aaacaTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATTCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat                                                                                      <  2:517749/139‑1 (MQ=255)                                                    aacaTTGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTCTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatt                                                                                     <  2:10994/140‑1 (MQ=255)                                                     acaTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattt                                                                                    <  2:281435/140‑1 (MQ=255)                                                        tAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatt                                                                                 <  1:325981/140‑1 (MQ=255)                                                          gTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGTTTTTATTTTTTATTaa                                                                               >  2:384022/1‑140 (MQ=255)                                                             agaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAg                                                                            <  2:487759‑M1/61‑1 (MQ=255)                                                               tCATTATACTACTATTGTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTCACATCGCTTTTATTATTTATTAAAAGta                                                                          <  2:237856/140‑1 (MQ=255)                                                                  ttATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTCTTATTTATTAAAAGtatat                                                                       >  1:746491/1‑140 (MQ=255)                                                                  ttATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatat                                                                       >  1:743385/1‑140 (MQ=255)                                                                  ttATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTCCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCGCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtagat                                                                       <  1:179662/140‑1 (MQ=255)                                                                   tataCCACTATTTTTATTTTTTAAGTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatata                                                                      <  1:364773/140‑1 (MQ=255)                                                                    ataCCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTTAAAGTATATAg                                                                     >  1:687462/1‑140 (MQ=255)                                                                        cACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCt                                                                 <  1:97797/140‑1 (MQ=255)                                                                        cACTATTTCTATTTTTTAAGTCATTAATCATTTCACTTTCTGCTCACTTTATTATTAGTTTACATACAAAAAGCGACGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCt                                                                 <  2:562985/140‑1 (MQ=255)                                                                                  atttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTAc                                                       >  1:242057/1‑140 (MQ=255)                                                                                  atttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTAc                                                       >  1:608258/1‑140 (MQ=255)                                                                                  atttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTAc                                                       >  2:69878/1‑140 (MQ=255)                                                                                   ttttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAATCAGCGATGCCTCACCTCTCGAATCTTGTGTGTTACATCGCTTTTATTATTTTTTCATTCTTTATATGTCTATTTATGTACt                                                      >  2:598829/1‑140 (MQ=255)                                                                                   ttttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt                                                      <  1:383756/140‑1 (MQ=255)                                                                                   ttttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt                                                      <  1:383754/140‑1 (MQ=255)                                                                                    ttttttATCCATTAATCATTTCACTTTCTGCTCAATTTATCCCTTATATACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTa                                                     <  2:357935/140‑1 (MQ=255)                                                                                    tttttAATTCATTAATCATCTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTa                                                     <  1:567141/140‑1 (MQ=255)                                                                                                 aaTCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc                                        <  2:37874/140‑1 (MQ=255)                                                                                                 aaTCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc                                        <  2:608258/140‑1 (MQ=255)                                                                                                      tttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTATCATTTc                                   >  2:558737/1‑140 (MQ=255)                                                                                                       ttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTACTTCTTCTTTAGCATTTCt                                  >  1:262714/1‑140 (MQ=255)                                                                                                       ttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCt                                  >  1:140379/1‑140 (MQ=255)                                                                                                       ttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCt                                  >  2:775731/1‑140 (MQ=255)                                                                                                        tCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGCTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTg                                 >  2:649830/1‑140 (MQ=255)                                                                                                          aCTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGtt                               >  2:796861/1‑140 (MQ=255)                                                                                                           cTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTa                              >  1:35155/1‑140 (MQ=255)                                                                                                               cTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGt                          >  2:415021/1‑140 (MQ=255)                                                                                                                 gCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTCAAATATATCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTAt                        <  1:588073/140‑1 (MQ=255)                                                                                                                   tCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGt                      >  1:233964/1‑140 (MQ=255)                                                                                                                   tCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGt                      >  1:232938/1‑140 (MQ=255)                                                                                                                   tCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCCAAACAGCTGTGTTACCTCGCTTTTATTATTTATTAAAAGTCTATAGGCCTAGACATGTACTAATTCTTCTTTAGCACTTCTGCTCACGTATgc                      >  2:761945/1‑139 (MQ=255)                                                                                                                             cttttattaaataatAATATCAATGCCTCACCTCTCTATACTGGTGTGTTACATCGTTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtct            >  1:487759‑M1/16‑140 (MQ=255)                                                                                                                              ttaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTAGTAATTCTTCTTTAGCATTTATGTTAAAGTATGTTTCAGCTtctc           >  1:625386/1‑140 (MQ=255)                                                                                                                              ttaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctc           <  1:477530/140‑1 (MQ=255)                                                                                                                               taGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctct          >  2:618673/1‑140 (MQ=255)                                                                                                                               taGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGGGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctct          <  2:116189/140‑1 (MQ=255)                                                                                                                                aGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctctc         <  2:17027/140‑1 (MQ=255)                                                                                                                                       atacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAg  >  1:55496/1‑140 (MQ=255)                                                                                                                                       atacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAg  >  1:712236/1‑140 (MQ=255)                                                                                                                                            |                                                                                                                                       TCATAAATATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAG  >  USA300TCH1516_ALE/1980728‑1981001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.