| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 774819 = | 117 (1.040) | 5 (0.050) | 5/244 | 15.7 | 4.5% | intergenic (+110/‑198) | fruA/nagA | PTS system fructose‑specific EIIABC component/N‑acetylglucosamine‑6‑phosphate deacetylase |
| ? | USA300TCH1516_ALE | 774873 = | 107 (1.050) | intergenic (+164/‑144) | fruA/nagA | PTS system fructose‑specific EIIABC component/N‑acetylglucosamine‑6‑phosphate deacetylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATTTTACTATATCTGCTTCGTTTGGCATAACTTTTTGCAAAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/774971‑774819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaagtgtttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATAGTAAAATATGAGTGTCTTAAAGTGAAAATTTATAAATAAAGAAGGGTT > USA300TCH1516_ALE/774873‑775011 TATTTTACTATATCTGCTTCGTTTGGCATAACTTTTTTTTTTTTTTTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAG > 2:579153/1‑141 ATTTTACTATATCTGCTTCGTTTGGCATAACTTTTTGCAAAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGA < 1:393473/141‑1 ATTTTACTATATCTGCTTCGTTTGGCATAACTTTTTGCAAAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGA > 1:527856/1‑141 TTACTATATCTGCTTCGTTTGGCATAACTTTTTGCAAAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAG < 4:193810/141‑1 TACTATATCTGCTTCGTTTGGCATAACTTTTTGCAAAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGT < 2:785533/141‑1 ACTATATCTGCTTCGTTTGGCATAACTTTTTGCACAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTTTTATAAACTGAATAAATAGAAAGTG > 2:900583/1‑141 ACTATATCTGCTTCGTTTGGCATAACTTTTTGCAAAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTGCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTG < 1:727963/141‑1 TATCTGCTTCGTTTGGCATAACTTTTTGCAAAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTT < 2:477417/141‑1 TATCTGCTTCGTTTGGCATAACTTTTTGCAAAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTT < 3:165742/141‑1 TATCTGCTTCGTTTGGCATAACTTTTTGCAAAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTT < 3:20542/141‑1 ATCTGCTTCGTTTGGCATAACTTTTTGCAAAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTT > 3:239499/1‑141 ATCTGCTTCGTTTGGCATAACTTTTTGCAAAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTT > 3:239508/1‑141 TCTGCTTCGTTTGGCATAACTTTTTGCAAAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTA > 1:875021/1‑141 AAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAG > 3:40397/1‑105 AAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAG < 4:40397/105‑1 CTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACG > 2:32850/1‑141 AATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCCAAAAGTTATGCCAAACGAAGaa > 1:132801/1‑139 TAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTATTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGA > 3:338582/1‑141 CACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATAGT > 2:684390/1‑141 CTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAACAGATATAGTAA > 2:345524/1‑141 AAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATAGTAAAATATGAGTGTCTTAAAGTGAAAATTTATAAATA > 2:458156/1‑141 AAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATAGTAAAATATGAGTGTCTTAAAGTGAAAATTTATAAATA < 4:20542/141‑1 AAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATAGTAAAATATGAGTGTCTTAAAGTGAAAATTTATAAATA > 1:107269/1‑141 TGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATG > 2:370244/1‑81 TGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATG < 1:370244/81‑1 GTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATAGTAAAATATGAGTGTCTTAAAGTGAAAATTTATAAATAAAGAA > 1:866472/1‑141 GTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATAGTAAAATATGAGTGTCTTAAAGTGAAAATTTATAAATAAAGAA > 1:589776/1‑141 GTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATAGTAAAATATGAGTGTCTTAAAGTGAAAATTTATAAATAAAGAA > 1:416267/1‑141 TATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATAGTAAAATATGAGTGTCTTAAAGTGAAAATTTATAAATAAAGAAGGGTT < 2:353913/141‑1 TATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATAGTAAAATATGAGTGTCTTAAAGTGAAAATTTATAAATAAAGAAGGGTT < 2:177659/141‑1 TATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATAGTAAAATATGAGTGTCTTAAAGTGAAAATTTATAAATAAAGAAGGGTT > 1:526304/1‑141 TATTTTTAGATAAATGAATGAAAAAATAGACAGCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATAGTAAAATATGAGTGTCTTAAAGTGAAAATTTATAAATAAAGAAGGGTT > 2:227548/1‑141 TATTTTACTATATCTGCTTCGTTTGGCATAACTTTTTGCAAAATATTAAAAAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/774971‑774819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaagtgtttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATAGTAAAATATGAGTGTCTTAAAGTGAAAATTTATAAATAAAGAAGGGTT > USA300TCH1516_ALE/774873‑775011 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |