| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1456995 = | 237 (0.660) | 34 (0.100) +TTAAA |
9/150 | NT | 11.4% | intergenic (‑109/‑135) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1918582 | 328 (0.920) | intergenic (‑300/+198) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein | |||||
ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1457084‑1456995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCCAACCATTGTTAGACTATAACAACGGTTGGCTCTTTAATTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGT < USA300TCH1516_ALE/1918582‑1918496 ||||| ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 1:842881/1‑91ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 2:4853422/1‑91ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 1:5063246/1‑91 TTTATTCTAGCACGTAGAGATGCATTTTTTGTGACATTGGTAGAACCCTTTCTGAACCATACGCATAGCGTATGGTATTCTTTTTACAATT > 2:20593/1‑91 TTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATT > 1:291844/1‑91 TTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTA > 2:2573039/1‑91 TTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTA > 1:3379152/1‑91 TATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAA > 1:170685/1‑91 TATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAA < 2:3985324/91‑1 TATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAA < 1:351562/91‑1 ATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAA < 1:5602594/91‑1 TTCTAGCACGTAGAGATGCATTTTTTGTTTCTATTGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAcc > 2:4688684/1‑89 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAG > 1:4638724/1‑91 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAG > 2:2076865/1‑91 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAG > 2:5193455/1‑91 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAG > 2:4688903/1‑91 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAG > 1:1939031/1‑91 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAG > 2:2389445/1‑91 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTCTTTACAATTAAAG > 1:6994828/1‑91 aTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGATCCGTTTCTGAACCATACGCATAGCGTATGGTTTCCTTCTTACAATTAAAGgg < 2:1940091/90‑3 CTAGCACGTATAGTTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACACTTAAAGAG < 2:748897/91‑1 CTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAG < 2:748044/91‑1 TAGCACGTAGAGATGCATTTTTTGTGTCAATTGTAGAACCTGTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACCATTAAAGAGC > 2:6463073/1‑91 TAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGATCCTTTTCTGAACCATACGCATAGCGTATTGTTTTCTTTTTACAATTAAAGAGC < 2:6632808/91‑1 TAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGC < 2:6632850/91‑1 TAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGC < 1:1145127/91‑1 TAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGC < 1:1967573/91‑1 TAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGC > 2:2977185/1‑91 TAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGC > 1:2679105/1‑91 TAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGC > 1:4883710/1‑91 AGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCC < 2:2601759/91‑1 AGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCC > 2:4119723/1‑91 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA > 1:1874224/1‑91 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA > 2:3497236/1‑91 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA > 2:3498131/1‑91 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA > 1:6571681/1‑91 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA < 1:6073820/91‑1 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA < 2:5419186/91‑1 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA < 2:5565093/91‑1 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA > 1:5607345/1‑91 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA > 1:3929272/1‑91 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA < 1:3794841/91‑1 CACGTAGAGATGCATTTTTTGTTACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAA > 2:6291652/1‑91 CACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAA > 1:2633200/1‑91 CACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAA > 2:5914522/1‑91 CACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAA < 1:5191703/91‑1 ACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAC < 1:96787/91‑1 ACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAC > 2:2436576/1‑91 ACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAC > 1:2991281/1‑91 CGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACC < 2:3438831/91‑1 CGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACC < 2:873617/91‑1 TAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCAT < 1:6257174/91‑1 TTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTAT < 1:5710303/91‑1 TTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATA < 2:2332876/91‑1 TTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATA < 1:6215563/91‑1 TTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATA < 1:4596401/91‑1 TTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAGGAGCCAACCATTGTTAGACTATAAC < 1:5414812/91‑1 TTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAAC < 2:958074/91‑1 TTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAAC < 1:2807485/91‑1 TTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAAC < 1:3236535/91‑1 TTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAAC < 2:5007052/91‑1 TGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACA < 2:2616698/91‑1 GTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAA < 1:3846189/91‑1 TGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAAC < 2:597120/91‑1 TGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAAC < 2:4004050/91‑1 ATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACGGTTG < 1:589911/91‑1 TAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCTTTAATTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGT > 1:2576253/1‑91 ||||| ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1457084‑1456995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCCAACCATTGTTAGACTATAACAACGGTTGGCTCTTTAATTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGT < USA300TCH1516_ALE/1918582‑1918496 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |