BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1456995 =	237 (0.660)	34 (0.100) +TTAAA	9/150	NT	11.4%	intergenic (‑109/‑135)	USA300HOU_RS07230/USA300HOU_RS07235	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1918582	328 (0.920)	34 (0.100) +TTAAA	9/150	NT	11.4%	intergenic (‑300/+198)	USA300HOU_RS07235/USA300HOU_RS09510	hypothetical protein/hypothetical protein

Only 100 of 325 total aligned reads displayed.

TATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAAT  >  USA300TCH1516_ALE/1456905‑1457084

 atatGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtttttt                                                                                          <  1:895620/91‑1 (MQ=255)

 atatGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtttttt                                                                                          >  1:2451493/1‑91 (MQ=255)

  tatGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTg                                                                                         >  1:6638333/1‑91 (MQ=255)

  tatGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTg                                                                                         <  1:4656005/91‑1 (MQ=255)

   atGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGt                                                                                        >  2:3776458/1‑91 (MQ=255)

    tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                                                                       <  1:3735363/91‑1 (MQ=255)

    tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTGTTTTGTa                                                                                       >  1:5538923/1‑91 (MQ=255)

     gCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaa                                                                                      <  2:1565731/91‑1 (MQ=255)

      cccGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaaa                                                                                     <  2:1851302/91‑1 (MQ=255)

         gTAAAGGACAATATACGTTAGAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTCTAGGTTTACTGCTTTTGTTTTTTGTAAAAAg                                                                                  <  2:5358545/91‑1 (MQ=255)

          tAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGa                                                                                 <  2:3641191/91‑1 (MQ=255)

           aaaaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaa                                                                                <  1:1763632/91‑1 (MQ=255)

            aaaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaaa                                                                               >  2:4592096/1‑91 (MQ=255)

             aaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaaaa                                                                              >  2:6357070/1‑91 (MQ=255)

              aGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAAc                                                                             >  2:4189750/1‑91 (MQ=255)

              aGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAAc                                                                             >  2:5459743/1‑91 (MQ=255)

                    tataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACg                                                                       <  1:1652322/91‑1 (MQ=255)

                    tataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACg                                                                       <  2:4807013/91‑1 (MQ=255)

                      taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGca                                                                     <  2:4351988/91‑2 (MQ=255)

                      taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCt                                                                     <  2:2871079/91‑1 (MQ=255)

                      taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCt                                                                     <  2:5907063/91‑1 (MQ=255)

                        cGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAt                                                                   >  1:3390003/1‑91 (MQ=255)

                        cGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAt                                                                   >  1:379324/1‑91 (MQ=255)

                         gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTTTTTTTTGTAAAAAGAAAACCATACGCTATg                                                                  >  2:6817984/1‑91 (MQ=255)

                         gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcatag                                                                  <  2:3870258/91‑5 (MQ=255)

                         gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATg                                                                  >  1:4410909/1‑91 (MQ=255)

                         gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATg                                                                  <  1:6903311/91‑1 (MQ=255)

                           tataACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCg                                                                <  1:3895859/91‑1 (MQ=255)

                            ataACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGt                                                               <  2:4943660/91‑1 (MQ=255)

                                ctacGTTTTATAAAAGCAGTAAACCCTTAAGACACTTTAGGTTTACTGCTTTTGTTTTATGTAACAAGAAAATCACACGCTATGAGTAggg                                                           >  1:5846395/3‑91 (MQ=255)

                                caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAATAGTAAACCATACGCTATGCGTATgg                                                           >  2:804718/1‑91 (MQ=255)

                                 aacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGt                                                          <  1:4052336/91‑1 (MQ=255)

                                 aacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGt                                                          <  1:6310311/91‑1 (MQ=255)

                                  acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGtt                                                         <  1:4459719/91‑1 (MQ=255)

                                  acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGtt                                                         >  2:2498100/1‑91 (MQ=255)

                                  acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCATAGCGTATGGtt                                                         <  2:6054943/91‑1 (MQ=39)

                                   cGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTc                                                        <  2:4410909/91‑1 (MQ=255)

                                     ttttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAg                                                      <  1:1019529/91‑1 (MQ=255)

                                      tttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGa                                                     <  2:4518402/91‑1 (MQ=255)

                                       ttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaa                                                    <  1:2111312/91‑1 (MQ=255)

                                         ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaaaa                                                  >  2:3333913/1‑91 (MQ=255)

                                         ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaaaa                                                  >  1:1291084/1‑91 (MQ=255)

                                         ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaaaa                                                  >  1:1480053/1‑91 (MQ=255)

                                         ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaaaa                                                  >  1:2039626/1‑91 (MQ=255)

                                         ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaaaa                                                  >  1:4775393/1‑91 (MQ=255)

                                         ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaaaa                                                  >  1:4098743/1‑91 (MQ=255)

                                          taAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAg                                                 >  1:2214024/1‑91 (MQ=255)

                                            aaaGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGt                                               <  1:3471115/91‑1 (MQ=255)

                                            aaaGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGt                                               <  1:996711/91‑1 (MQ=255)

                                              aGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTc                                             <  2:884060/91‑1 (MQ=255)

                                              aGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTc                                             >  1:6851585/1‑91 (MQ=255)

                                              aGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTc                                             <  1:274164/91‑1 (MQ=255)

                                                  gTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTGAGAAAAGGTTCTAcc                                         >  2:5376221/1‑91 (MQ=255)

                                                  gTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTAcc                                         >  1:4192884/1‑91 (MQ=255)

                                                   tAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCa                                        <  1:6362931/91‑1 (MQ=255)

                                                    aaaCCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCAt                                       >  1:1143222/1‑91 (MQ=255)

                                                    aaaCCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCAt                                       <  1:1919893/91‑1 (MQ=255)

                                                     aaCCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCAtt                                      >  2:307075/1‑91 (MQ=255)

                                                      aCCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTg                                     >  1:4905490/1‑91 (MQ=255)

                                                       cccTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGt                                    <  1:1148066/91‑1 (MQ=255)

                                                         gttgttatagtctaacaatggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTca                                  <  2:597120‑M1/58‑1 (MQ=255)

                                                         gttgttatagtctaacaatggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTca                                  <  2:4004050‑M1/58‑1 (MQ=255)

                                                         cTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTca                                  <  2:6273944/91‑1 (MQ=255)

                                                         cTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTca                                  <  1:6336377/91‑1 (MQ=255)

                                                         cTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTca                                  <  2:1755137/91‑1 (MQ=255)

                                                           tgttatagtctaacaatggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTcaca                                <  2:2616698‑M1/60‑1 (MQ=255)

                                                            gttatagtctaacaatggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaa                               <  2:5007052‑M1/61‑1 (MQ=255)

                                                            gttatagtctaacaatggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaa                               <  1:2807485‑M1/61‑1 (MQ=255)

                                                            gttatagtctaacaatggttggctccttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaa                               <  1:5414812‑M1/61‑1 (MQ=255)

                                                              tatagtctaacaatggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaaaa                             <  2:2332876‑M1/63‑1 (MQ=255)

                                                               acacTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaaaaa                            >  2:5204850/1‑91 (MQ=255)

                                                                cacTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaaaaaa                           <  2:1375489/91‑1 (MQ=255)

                                                                 acTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAAt                          >  2:5744775/1‑91 (MQ=255)

                                                                 acTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAAt                          >  1:5739466/1‑91 (MQ=255)

                                                                 acTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAAt                          <  1:3279062/91‑1 (MQ=255)

                                                                 acTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAAt                          <  1:1665509/91‑1 (MQ=255)

                                                                 acTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAAt                          >  1:1832860/1‑91 (MQ=255)

                                                                 acTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAAt                          >  2:1219055/1‑91 (MQ=255)

                                                                  cTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATg                         <  2:2546778/91‑1 (MQ=255)

                                                                   tttAGGTTTACTGCTTTTGTTTTTTTTTTTTTTTTAAATATACGGTATGTGTATGGTTTAGAATATGTTTTACCATTTTCAGACAAATTga                        >  2:6540547/1‑90 (MQ=255)

                                                                      aGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAtc                     <  1:3139022/91‑1 (MQ=255)

                                                                          atggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTa                 <  1:6257174‑M1/75‑1 (MQ=255)

                                                                            ggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACg               <  2:3438831‑M1/77‑1 (MQ=255)

                                                                             gttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGt              >  1:2991281‑M1/14‑91 (MQ=255)

                                                                              ttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTg             >  1:2633200‑M1/13‑91 (MQ=255)

                                                                               tggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc            <  2:5565093‑M1/80‑1 (MQ=255)

                                                                               tggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc            <  1:6073820‑M1/80‑1 (MQ=255)

                                                                               tggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc            >  2:3498131‑M1/12‑91 (MQ=255)

                                                                               tggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc            >  1:5607345‑M1/12‑91 (MQ=255)

                                                                                 gctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTa          >  1:2679105‑M1/10‑91 (MQ=255)

                                                                                 gctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTa          <  2:6632850‑M1/82‑1 (MQ=255)

                                                                                  ctctttaaGTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAACTATACGTGCTAg         <  2:748897‑M1/83‑1 (MQ=255)

                                                                                    ctttaaTTGTAAAGAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaa       >  1:6994828‑M1/7‑91 (MQ=255)

                                                                                    ctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaa       >  1:1939031‑M1/7‑91 (MQ=255)

                                                                                    ctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaa       >  2:2389445‑M1/7‑91 (MQ=255)

                                                                                    ctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaa       >  2:2076865‑M1/7‑91 (MQ=255)

                                                                                      ttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaata     <  1:351562‑M1/87‑1 (MQ=255)

                                                                                        aaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaataaa   >  1:291844‑M1/3‑91 (MQ=255)

                                                                                         aTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaataaat  >  1:5063246‑M1/2‑91 (MQ=255)

                                                                                         aTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaataaat  >  1:842881‑M1/2‑91 (MQ=255)

TATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAAT  >  USA300TCH1516_ALE/1456905‑1457084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.