| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 133002 = | 356 (1.000) | 21 (0.060) | 11/152 | NT | 5.8% | coding (118/996 nt) | yfiZ_1 | putative siderophore transport system permease protein YfiZ |
| ? | USA300TCH1516_ALE | 133036 = | 340 (1.000) | coding (84/996 nt) | yfiZ_1 | putative siderophore transport system permease protein YfiZ | |||||
Only 100 of 455 total aligned reads displayed.
CAGCACCAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAAC > USA300TCH1516_ALE/132912‑133092 | tttacgatgctacttaaaccaaaataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaata < 1:4069435‑M1/1‑1 (MQ=255) ttacgatgctacttaaaccaaaataccaaatcgttattgctggtttgtgtcttgcaatagtagctatcttaagtttaatgattggaaatAc > 2:2691274‑M1/90‑91 (MQ=255) ttacgatgctacttaaaccaaaataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatAc > 1:5021667‑M1/90‑91 (MQ=255) ttacgatgctacttaaaccaaaataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatAc > 1:2684029‑M1/90‑91 (MQ=255) tacgatgctacttaaaccaaaataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatACg > 1:459208‑M1/89‑91 (MQ=255) gcaCCAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACg < 2:6897095/91‑1 (MQ=255) gcaCCAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACg < 1:5722950/91‑1 (MQ=255) caCCAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGc > 1:1080364/1‑91 (MQ=255) aCCAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGcc < 2:1296045/91‑1 (MQ=255) aGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGt > 1:1802978/1‑91 (MQ=255) gTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTACATCATTTTCACTATCAAAGTTGAATAACGCCTGTa > 1:6497620/1‑91 (MQ=255) gTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTa > 2:240823/1‑91 (MQ=255) cAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATc < 2:1097069/91‑1 (MQ=255) tAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGATAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCAcc < 1:5585622/91‑1 (MQ=255) aaCGCAATGATTGTTCTCGACGCCCGTGCACCAGCGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCg > 2:4145538/1‑91 (MQ=255) aCGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGt < 1:6708312/91‑1 (MQ=255) aCGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGt > 1:6307441/1‑91 (MQ=255) gCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTGTCAccaggt < 2:4317718/91‑5 (MQ=255) cAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTAcc > 1:1428262/1‑91 (MQ=255) tGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTgg < 1:4667289/91‑1 (MQ=255) gATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGt > 2:4427840/1‑91 (MQ=255) aataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatACGCCTGTATCACCGTACCTGGt > 2:3652119‑M1/69‑91 (MQ=255) ataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatACGCCTGTATCACCGTACCTGGTg > 2:5912429‑M1/68‑91 (MQ=255) taccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatACGCCTGTATCACCGTACCTGGTGa > 1:5923343‑M1/67‑91 (MQ=255) accaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatACGCCTGTATCACCGTACCTGGTGac > 2:5996473‑M1/66‑91 (MQ=255) gTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGaca > 1:929409/1‑91 (MQ=255) gTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGaca < 2:6640058/91‑1 (MQ=255) tctcGACGCCCGTGCACCAGTGACAACATCATGTGAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGAcaca < 1:2492397/91‑1 (MQ=255) tctcGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGAcaca < 1:3948409/91‑1 (MQ=255) ctcGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACaa < 2:5358276/91‑1 (MQ=255) gACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCg > 1:4329397/1‑91 (MQ=255) gACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCg < 1:6451575/91‑1 (MQ=255) cgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatACGCCTGTATCACCGTACCTGGTGACACAAGCg > 2:2167616‑M1/59‑91 (MQ=255) aCGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGt > 1:4358880/1‑91 (MQ=255) cccGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACGCAAGCGTAtt > 2:5544268/1‑91 (MQ=255) cccGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTAtt > 2:4057577/1‑91 (MQ=255) cccGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTAtt > 1:1750325/1‑91 (MQ=255) cccGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTAtt > 2:1203629/1‑91 (MQ=255) cGTGCACCAGTGACAACATCATGTAATTCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTc < 1:3237243/91‑1 (MQ=255) gTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTcc < 1:4909692/91‑1 (MQ=255) gTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTcc > 2:5204062/1‑91 (MQ=255) gTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTcc > 2:1380217/1‑91 (MQ=255) tGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCa < 2:3081871/91‑1 (MQ=255) tGCACCAGTGACAACATCATGTAAATCGTTTTCACGATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGGGACACAAGCGTATTTCCa < 2:492557/91‑1 (MQ=255) gCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACATGCGTATTTCCaa > 2:4500570/1‑91 (MQ=255) gCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCaa > 1:5144529/1‑91 (MQ=255) ccAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa < 2:4701756/91‑1 (MQ=255) cAGGGACAACATCATGTAAATCGTTTGCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCAt < 2:3216967/91‑1 (MQ=255) gTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTa > 1:77317/1‑91 (MQ=255) tGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTaa > 2:6039086/1‑91 (MQ=255) gACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTaaa < 2:2837837/91‑1 (MQ=255) gACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTaaa > 1:4157466/1‑91 (MQ=255) caacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACt > 2:33675/1‑91 (MQ=255) aacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACtt > 2:5687087/1‑91 (MQ=255) aacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACtt < 2:4590825/91‑1 (MQ=255) aacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACtt > 2:4757573/1‑91 (MQ=255) acaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTa > 2:2340319/1‑91 (MQ=255) catcatGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTaa > 1:1942705/1‑91 (MQ=255) catcatGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTaa > 1:335403/1‑91 (MQ=255) tcatGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGa > 2:1676000/1‑91 (MQ=255) catGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGAt > 2:508842/1‑91 (MQ=255) tGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAg > 2:6814834/1‑91 (MQ=255) tGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAg > 1:2090121/1‑91 (MQ=255) gTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGc > 2:2915530/1‑91 (MQ=255) gTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGc < 1:1139583/91‑1 (MQ=255) aaaTCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGcta < 2:2042050/91‑1 (MQ=255) aaaTCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGcta > 1:3606987/1‑91 (MQ=255) aaTCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGATACAAGCGTATTTCCAATCATTAAACTTAAGATAGctac > 1:5786252/1‑91 (MQ=255) aTCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTGCCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGctact < 1:6804729/91‑1 (MQ=255) aTCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGctact > 2:6074466/1‑91 (MQ=255) aTCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGctact < 1:5204062/91‑1 (MQ=255) tCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGctacta < 1:1161789/91‑1 (MQ=255) tCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGctacta < 1:2928906/91‑1 (MQ=255) tCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGctacta < 1:6112657/91‑1 (MQ=255) cGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTAt > 2:6393361/1‑91 (MQ=255) cGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTAt < 1:3495154/91‑1 (MQ=255) ttCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCa > 2:873221/1‑91 (MQ=255) ttCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCa < 2:4668743/91‑1 (MQ=255) tCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCaa < 2:1988121/91‑1 (MQ=255) tCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCaa < 1:2002342/91‑1 (MQ=255) cACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAg > 1:3423838/1‑91 (MQ=255) cACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAg > 1:3191455/1‑91 (MQ=255) cACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAg > 1:2715584/1‑91 (MQ=255) aCTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGa > 1:6233067/1‑91 (MQ=255) aCTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGa > 2:2978671/1‑91 (MQ=255) cTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGAc < 2:2613117/91‑1 (MQ=255) tATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACa < 1:3022491/91‑1 (MQ=255) cAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTCTTGCACGCCATaa > 2:3935022/1‑91 (MQ=255) cAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATaa < 1:2293834/91‑1 (MQ=255) cAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATaa < 1:240823/91‑1 (MQ=255) aaaGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATaaa > 1:3085635/1‑91 (MQ=255) aaGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAAc > 1:2044670/1‑91 (MQ=255) aGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGa > 2:1509860/1‑83 (MQ=255) aGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGa < 1:1509860/83‑1 (MQ=255) aGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAAcc < 1:5416071/91‑1 (MQ=255) gAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCa > 2:3054416/1‑91 (MQ=255) aaTAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCaa > 1:4731311/1‑91 (MQ=255) aaTAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCaa > 1:2191084/1‑91 (MQ=255) aaTAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCaa > 1:1914955/1‑91 (MQ=255) aTAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAAt > 1:1267996/1‑91 (MQ=255) | CAGCACCAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAAC > USA300TCH1516_ALE/132912‑133092 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |