BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	133002 =	356 (1.000)	21 (0.060)	11/152	NT	5.8%	coding (118/996 nt)	yfiZ_1	putative siderophore transport system permease protein YfiZ
*	?	USA300TCH1516_ALE	133036 =	340 (1.000)	21 (0.060)	11/152	NT	5.8%	coding (84/996 nt)	yfiZ_1	putative siderophore transport system permease protein YfiZ

Only 100 of 439 total aligned reads displayed.

CGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTAAAA  >  USA300TCH1516_ALE/132946‑133126

cGCCCGTGCACTAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTa                                                                                            <  2:6968452/91‑1 (MQ=255)

cGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTa                                                                                            >  1:6183481/1‑91 (MQ=255)

    cGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTc                                                                                        >  1:4627619/1‑91 (MQ=255)

    cGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTc                                                                                        <  1:5692716/91‑1 (MQ=255)

     gTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTcc                                                                                       >  2:1380217/1‑91 (MQ=255)

      tGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCa                                                                                      <  1:1974005/91‑1 (MQ=255)

       gCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCaa                                                                                     <  2:2914285/91‑1 (MQ=255)

         aCCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATc                                                                                   <  1:1155553/91‑1 (MQ=255)

          ccAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                                                                  >  2:4216783/1‑91 (MQ=255)

           cAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCAt                                                                                 <  1:3421922/91‑1 (MQ=255)

            aGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCAtt                                                                                >  1:1091793/1‑91 (MQ=255)

            aGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCAtt                                                                                >  1:1428818/1‑91 (MQ=255)

            aGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCAtt                                                                                >  2:5575950/1‑91 (MQ=255)

                acaacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCATACCTGGTGACACAAGCGTATTTCCAATCATTAAAc                                                                            >  2:2369650/1‑91 (MQ=255)

                 caacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACt                                                                           <  1:3270146/91‑1 (MQ=255)

                 caacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACt                                                                           >  2:33675/1‑91 (MQ=255)

                  aacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACtt                                                                          <  2:4589850/91‑1 (MQ=255)

                   acaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTa                                                                         >  1:6333710/1‑91 (MQ=255)

                   acaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTa                                                                         >  2:462305/1‑91 (MQ=255)

                   acaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTa                                                                         <  2:1560315/91‑1 (MQ=255)

                     atcatGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAg                                                                       >  2:2293834/1‑91 (MQ=255)

                      tcatGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGa                                                                      <  2:3259959/91‑1 (MQ=255)

                       catGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGAt                                                                     >  1:2353418/1‑91 (MQ=255)

                         tGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAg                                                                   <  2:3061265/91‑1 (MQ=255)

                         tGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAg                                                                   >  1:2090121/1‑91 (MQ=255)

                         tGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAg                                                                   >  2:5701957/1‑91 (MQ=255)

                          gTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGc                                                                  <  1:3996729/91‑1 (MQ=255)

                          gTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGc                                                                  <  1:2875289/91‑1 (MQ=255)

                            aaaTCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGcta                                                                >  1:3606987/1‑91 (MQ=255)

                                     tCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCaa                                                       <  2:4913365/91‑1 (MQ=255)

                                      cACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAg                                                      >  2:4672665/1‑91 (MQ=255)

                                        cTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGAc                                                    <  2:2613117/91‑1 (MQ=255)

                                        cTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGAc                                                    <  2:4119611/91‑1 (MQ=255)

                                           tCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATa                                                 <  2:5117093/91‑1 (MQ=255)

                                           tCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCAAATCATTAAACTTAAGATAGCTACTATTGCAAGACATa                                                 >  1:5823780/1‑91 (MQ=255)

                                            cAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTCTTGCACGCCATaa                                                >  2:3935022/1‑91 (MQ=255)

                                            cAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATaa                                                <  1:1777050/91‑1 (MQ=255)

                                            cAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATaa                                                <  2:6729562/91‑1 (MQ=255)

                                            cAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATaa                                                >  1:5153515/1‑91 (MQ=255)

                                            cAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATaa                                                >  1:3173787/1‑91 (MQ=255)

                                            cAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATaa                                                >  1:3492565/1‑91 (MQ=255)

                                              aaGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAAc                                              >  2:603838/1‑91 (MQ=255)

                                              aaGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAAc                                              >  1:2044670/1‑91 (MQ=255)

                                              aaGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAAc                                              >  2:1157214/1‑91 (MQ=255)

                                              aaGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAAc                                              >  2:599729/1‑91 (MQ=255)

                                               aGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGa                                                     <  1:1509860/83‑1 (MQ=255)

                                               aGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAAcc                                             <  1:5418685/91‑1 (MQ=255)

                                                 ttGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAg                                           <  2:4718846/91‑1 (MQ=255)

                                                 ttGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAg                                           <  1:2188106/91‑1 (MQ=255)

                                                  tGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGc                                          <  2:1658169/91‑1 (MQ=255)

                                                  tGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGc                                          <  1:5224414/91‑1 (MQ=255)

                                                     aTAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAAt                                       <  2:2515577/91‑1 (MQ=255)

                                                     aTAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAAt                                       <  2:1347349/91‑1 (MQ=255)

                                                       aaCGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATaa                                     >  1:5517750/1‑91 (MQ=255)

                                                        ACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATACACCAGCAATAAc                                    <  2:4453870‑M1/91‑1 (MQ=255)

                                                        ACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATACACCAGCAATAAc                                    <  2:5394733‑M1/91‑1 (MQ=255)

                                                          GCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGa                                  <  1:4192618‑M1/91‑1 (MQ=255)

                                                            cTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGAtt                                <  1:3799494/91‑1 (MQ=255)

                                                             tGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGAttt                               <  1:6849228/91‑1 (MQ=255)

                                                              gTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAATATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTg                              <  2:6453048/91‑1 (MQ=255)

                                                                aTCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGt                            >  1:4951680/1‑91 (MQ=255)

                                                                 tCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTa                           <  2:801468/91‑1 (MQ=255)

                                                                 tCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTa                           <  1:1624744/91‑1 (MQ=255)

                                                                 tCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTa                           <  1:2427611/91‑1 (MQ=255)

                                                                 tCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTa                           >  1:479967/1‑91 (MQ=255)

                                                                   accaggtacggtgatacaagcgtATTTCCAATCATTAAACTTAAGATAGCTACTATTGCTAGACATAAACCAGCAATAACGATTTGGAAtt                         >  1:6498037‑M2/24‑91 (MQ=255)

                                                                   aCCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTAtt                         >  1:3322100/1‑91 (MQ=255)

                                                                    ccaggtacggtgatacaggcgtATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTAttt                        >  1:4357097‑M2/23‑91 (MQ=255)

                                                                    ccGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTAttt                        <  2:1942705/91‑1 (MQ=255)

                                                                    ccGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTAttt                        <  2:3191455/91‑1 (MQ=255)

                                                                    ccGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTAttt                        <  1:4101874/91‑1 (MQ=255)

                                                                    ccGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAACACATAAACCAGCAATAACGACTTGGTCttt                        >  2:3715/1‑91 (MQ=255)

                                                                     cGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTAtttt                       >  2:4341201/1‑91 (MQ=255)

                                                                     cGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTAtttt                       <  1:454737/91‑1 (MQ=255)

                                                                       tACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTgg                     >  1:4286280/1‑91 (MQ=255)

                                                                       tACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTgg                     >  2:6343685/1‑91 (MQ=255)

                                                                       tACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTgg                     >  1:795486/1‑91 (MQ=255)

                                                                       ggtacggtgatacaggcgtATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTgg                     >  1:2695384‑M2/20‑91 (MQ=255)

                                                                        aCCTGGTGATACAAGCATATTTCCAATCACTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGt                    >  1:6417634/1‑91 (MQ=255)

                                                                        aCCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGt                    >  1:2777039/1‑91 (MQ=255)

                                                                         ccTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGtt                   >  1:6036306/1‑91 (MQ=255)

                                                                           tGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTa                 >  1:5920267/1‑91 (MQ=255)

                                                                           tGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTa                 <  2:2114471/91‑1 (MQ=255)

                                                                            ggTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTaa                >  2:1015649/1‑91 (MQ=255)

                                                                             gTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAg               >  1:1200286/1‑91 (MQ=255)

                                                                              tGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGt              <  2:1881533/91‑1 (MQ=255)

                                                                               gACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTa             <  2:2725631/91‑1 (MQ=255)

                                                                                 cacaAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGc           >  1:2993649/1‑91 (MQ=255)

                                                                                 cacaAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGc           >  1:6773301/1‑91 (MQ=255)

                                                                                 cacaAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGc           >  2:6161067/1‑91 (MQ=255)

                                                                                 cacaAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGc           >  2:6588350/1‑91 (MQ=255)

                                                                                   caAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCAt         >  2:5015118/1‑91 (MQ=255)

                                                                                   caAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCAt         >  1:1892138/1‑91 (MQ=255)

                                                                                     aGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCg       <  1:302769/91‑1 (MQ=255)

                                                                                     aGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCg       <  2:3576016/91‑1 (MQ=255)

                                                                                        gtATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTaa    >  1:5021667‑M2/3‑91 (MQ=255)

                                                                                        gtATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTaa    >  2:2997634‑M2/3‑91 (MQ=255)

                                                                                         tATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTaaa   <  1:4435144‑M2/90‑1 (MQ=255)

                                                                                         tATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTaaa   >  1:2631630‑M2/2‑91 (MQ=255)

                                                                                         tATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTaaa   >  2:2018779‑M2/2‑91 (MQ=255)

CGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTAAAA  >  USA300TCH1516_ALE/132946‑133126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.