BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2772633 =	408 (1.140)	21 (0.070)	7/134	NT	6.7%	intergenic (+7/+53)	phoB/USA300TCH1516_02632	Alkaline phosphatase 3/hypothetical protein
*	?	USA300TCH1516_ALE	2772676 =	240 (0.800)	21 (0.070)	7/134	NT	6.7%	intergenic (+50/+10)	phoB/USA300TCH1516_02632	Alkaline phosphatase 3/hypothetical protein

Only 100 of 530 total aligned reads displayed.

GCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTT  >  USA300TCH1516_ALE/2772543‑2772723

 aacattagttggcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccataa                                                                                            <  2:5761496‑M1/2‑1 (MQ=255)

  acattagttagcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccataaa                                                                                           >  1:5008032‑M1/89‑91 (MQ=255)

    attagttggcggtttatacttcgcatttaaaaaataccaagaacatgataaccaagcacctaacattgagtactaaattaaaacataaaaa                                                                                         >  2:5124037‑M1/87‑91 (MQ=255)

    aCGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATGCAGAAAGCGCAAAAATAATATTTGATATATTCAAGTATAGCATaaaaaa                                                                                         <  2:6958071/91‑1 (MQ=255)

    aCGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaa                                                                                         >  2:2387440/1‑91 (MQ=255)

     cGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaaa                                                                                        >  2:6309580/1‑91 (MQ=255)

     cGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaaa                                                                                        >  2:1609890/1‑91 (MQ=255)

     cGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaaa                                                                                        >  1:1414681/1‑91 (MQ=255)

      ggACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑t                                                                                      <  1:2543517/91‑1 (MQ=255)

      ggACCTAGATCAGAATCATTTAGTGGTAAGATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑t                                                                                      <  1:6187966/91‑1 (MQ=255)

       agttggcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑tt                                                                                     >  1:6144282‑M1/84‑91 (MQ=255)

           tAGATCAGAATCATTTAGTGGTAATATCGAACATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCg                                                                                 >  1:6836620/1‑91 (MQ=255)

           tAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCg                                                                                 >  1:2226065/1‑91 (MQ=255)

           ggcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑TTCCCg                                                                                 >  2:3868806‑M1/80‑91 (MQ=255)

           ggcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑TTCCCg                                                                                 >  2:20341‑M1/80‑91 (MQ=255)

            gcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑TTCCCGa                                                                                >  2:1775517‑M1/79‑91 (MQ=255)

            aGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaa                                                                                           <  1:3077122/81‑1 (MQ=255)

            aGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGa                                                                                >  2:1008091/1‑91 (MQ=255)

              ataaGAATCATATAGTGATAATATCGAAAATACAGAAAACGAAAAAATAATAGTTGATATATTCAAAAAAAAAAAAAAAAAA‑TTCCCGAGc                                                                              <  2:3471455/88‑1 (MQ=255)

               tCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTccc                                                                                  <  1:5605549/86‑1 (MQ=255)

               tCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCa                                                                             >  2:4899735/1‑91 (MQ=255)

               tCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCa                                                                             <  2:623107/91‑1 (MQ=255)

                cAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCTCGAGCAc                                                                            <  1:6722732/91‑1 (MQ=255)

                cAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCAc                                                                            <  1:3669206/91‑1 (MQ=255)

                cAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCAc                                                                            <  1:5076939/91‑1 (MQ=255)

                   aaTCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACtat                                                                         >  2:3800308/1‑91 (MQ=255)

                     tCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATaa                                                                       <  2:585069/91‑1 (MQ=255)

                     tCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATaa                                                                       >  1:2607934/1‑91 (MQ=255)

                     tCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATaa                                                                       >  1:426898/1‑91 (MQ=255)

                     tCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATaa                                                                       <  1:1656157/91‑1 (MQ=255)

                         ttAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAg                                                                   >  1:5945338/1‑91 (MQ=255)

                         ttAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAg                                                                   >  1:2073937/1‑91 (MQ=255)

                          tAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAGAAA‑TTCCCGAGCACTATAACAAgg                                                                  >  1:6622661/1‑91 (MQ=255)

                          gcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑TTCCCGAGCACTATAACAAgg                                                                  >  2:4705580‑M1/65‑91 (MQ=255)

                           aGTGGTAATATCGAAAATACAGAAAGCGCAAAACTAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGgt                                                                 >  1:6951954/1‑91 (MQ=255)

                            gTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGgtg                                                                >  2:5994219/1‑91 (MQ=255)

                              ggTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGtt                                                              <  1:1771897/91‑1 (MQ=255)

                               taaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaacttaaaccatAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTc                                                             >  2:6468126‑M1/60‑91 (MQ=255)

                                tAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCg                                                            >  2:2635292/1‑91 (MQ=255)

                                tAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCg                                                            <  2:2877230/91‑1 (MQ=255)

                                aaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCg                                                            >  1:3751181‑M1/59‑91 (MQ=255)

                                 aaTATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCgg                                                           <  2:2591907/91‑1 (MQ=255)

                                 aaTATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCgg                                                           >  2:3682343/1‑91 (MQ=255)

                                 aaTATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCgg                                                           >  1:2414690/1‑91 (MQ=255)

                                  atatCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCggg                                                          >  2:3266887/1‑91 (MQ=255)

                                  atatCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCggg                                                          <  2:78050/91‑1 (MQ=255)

                                  atatCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCggg                                                          <  1:4899735/91‑1 (MQ=255)

                                   tatCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGa                                                         <  1:4710603/91‑1 (MQ=255)

                                   aaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaagcatAAAAAAATTCCCGAGCACTATAACAAGGTGTTCggg                                                          >  1:6349825‑M1/56‑91 (MQ=255)

                                    atCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGaa                                                        >  2:4876008/1‑91 (MQ=255)

                                    aataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGaa                                                        >  1:3531219‑M1/55‑91 (MQ=255)

                                     ataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGaa                                                        >  1:784853‑M1/54‑91 (MQ=255)

                                      cGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAAtt                                                      >  1:343097/1‑91 (MQ=255)

                                         aaaTACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAAttttt                                                   >  1:1229659/1‑91 (MQ=255)

                                            tACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTAt                                                <  1:2028930/91‑1 (MQ=255)

                                              cAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAAtttttt                                                  >  1:1022534/1‑87 (MQ=255)

                                              cAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATgg                                              <  2:3493878/91‑1 (MQ=255)

                                               cgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATgg                                              >  1:6379715‑M1/44‑91 (MQ=255)

                                               aGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGt                                             <  2:6113266/91‑1 (MQ=255)

                                               aGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGt                                             >  1:3937194/1‑91 (MQ=255)

                                                 aaaGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGttt                                           <  1:2707325/91‑1 (MQ=255)

                                                  aaGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAG‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTa                                          >  2:5008810/1‑91 (MQ=255)

                                                  aaGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTa                                          >  2:4568888/1‑91 (MQ=255)

                                                     cgcAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAAtt                                       >  2:149809/1‑91 (MQ=255)

                                                     cgcAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAAtt                                       <  2:3095784/91‑1 (MQ=255)

                                                         aaaaTAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGt                                   <  2:3345158/91‑1 (MQ=255)

                                                         aaaaTAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGt                                   >  1:4436213/1‑91 (MQ=255)

                                                         aaaaTAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGt                                   <  1:1301501/91‑1 (MQ=255)

                                                           aataatATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTAc                                 >  2:4461117/1‑91 (MQ=255)

                                                             taataCTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTc                               <  2:685286/91‑1 (MQ=255)

                                                                 atTTGATATATTCAAGTAAAGCATAAAAAAC‑TTCCCGAGCACTATAACAAGGTGTACGGGAATTTTTTATGGTTTAATTTCGTACTCaacg                           >  2:5561532/1‑89 (MQ=255)

                                                                 atTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATg                           >  2:4833951/1‑91 (MQ=255)

                                                                  tttGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGt                          <  2:217902/91‑1 (MQ=255)

                                                                  tttGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGt                          <  1:5391750/91‑1 (MQ=255)

                                                                   ttGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGtt                         <  1:5498824/91‑1 (MQ=255)

                                                                   ttGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTGTTATGTTTTAATTTAGTACTCAATGtt                         <  2:1084241/91‑1 (MQ=255)

                                                                    tcatatatTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAAGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTa                        <  2:5273979/89‑1 (MQ=255)

                                                                    tGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTa                        <  1:4142284/91‑1 (MQ=255)

                                                                    tGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTa                        >  1:2894706/1‑91 (MQ=255)

                                                                     gATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAg                       >  2:1255464/1‑91 (MQ=255)

                                                                     gATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAg                       <  2:2506310/91‑1 (MQ=255)

                                                                     gATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAg                       <  1:4078230/91‑1 (MQ=255)

                                                                         tatTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGc                   <  2:429863/91‑1 (MQ=255)

                                                                           ttCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCtt                 >  2:2938986/1‑91 (MQ=255)

                                                                            tCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTg                <  2:4165738/91‑1 (MQ=255)

                                                                            tCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTg                >  2:5368479/1‑91 (MQ=255)

                                                                            tCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTg                <  1:1609514/91‑1 (MQ=255)

                                                                             cAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTgg               <  2:5653689/91‑1 (MQ=255)

                                                                              aaGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGt              <  1:2931232/91‑1 (MQ=255)

                                                                               aGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGtt             >  1:2140567/1‑91 (MQ=255)

                                                                               aGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGtt             >  1:312573/1‑91 (MQ=255)

                                                                                 tAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTaa           >  2:4038940/1‑91 (MQ=255)

                                                                                 tAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTaa           <  1:3804062/91‑1 (MQ=255)

                                                                                  aaaGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAac          >  1:6489538/1‑91 (MQ=255)

                                                                                   aaGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAaca         <  1:4209146/91‑1 (MQ=255)

                                                                                   aaGCATAAAAAAA‑TTCCCGAGCAATATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAaca         <  1:5243973/91‑1 (MQ=255)

                                                                                    aGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAacac        >  2:666956/1‑91 (MQ=255)

                                                                                     gCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACg       >  1:4631235/1‑91 (MQ=255)

                                                                                      cATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGt      >  1:5550667/1‑91 (MQ=255)

                                                                                         aaaaaaa‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCt   <  1:3266887/91‑1 (MQ=255)

GCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTT  >  USA300TCH1516_ALE/2772543‑2772723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.