BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2772633 =	408 (1.140)	21 (0.070)	7/134	NT	6.7%	intergenic (+7/+53)	phoB/USA300TCH1516_02632	Alkaline phosphatase 3/hypothetical protein
*	?	USA300TCH1516_ALE	2772676 =	240 (0.800)	21 (0.070)	7/134	NT	6.7%	intergenic (+50/+10)	phoB/USA300TCH1516_02632	Alkaline phosphatase 3/hypothetical protein

Only 100 of 469 total aligned reads displayed.

ATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATAAACCGCCAACTAATGTTAA  >  USA300TCH1516_ALE/2772586‑2772766

aTACAGAAAGCGCAAAGATAAGATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAGCAAGGTGTTCGGGAATTTTTTa                                                                                            <  1:4898772/91‑1 (MQ=255)

aTACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTa                                                                                            >  1:978970/1‑91 (MQ=255)

 tACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTAt                                                                                           <  1:2028930/91‑1 (MQ=255)

 tACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTAt                                                                                           <  2:3839635/91‑1 (MQ=255)

  aCAGAAAGCGGAAAAATAATATTTGATATATTCGAGTAAAGCATAAAAAAATTCCCGAGTACTATAACAAGGTGTTCGGGAATTTTTTATg                                                                                          <  1:6392512/91‑1 (MQ=255)

   cAGAAGGCGCAAAGATAATATTTGGTATATTCAAGTAAAGCATAATTAAATTCCCGTGCACTATAACAAGGTGTTCGGGAATTTTTTATgg                                                                                         <  1:4428067/91‑1 (MQ=255)

   cAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATgg                                                                                         >  1:1544488/1‑91 (MQ=255)

    aGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGt                                                                                        >  1:3937194/1‑91 (MQ=255)

    aGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGt                                                                                        <  1:4215508/91‑1 (MQ=255)

    aGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGt                                                                                        <  2:1828099/91‑1 (MQ=255)

    aGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGt                                                                                        <  1:2692420/91‑1 (MQ=255)

     gAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGtt                                                                                       >  1:3772631/1‑91 (MQ=255)

     gAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGtt                                                                                       >  1:2909386/1‑91 (MQ=255)

     gAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGtt                                                                                       >  1:2115838/1‑91 (MQ=255)

        aGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTaa                                                                                    <  1:2322942/91‑1 (MQ=255)

             aaaaaTAATATTTGATATATTCGAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAg                                                                               >  2:5341991/1‑91 (MQ=255)

             aaaaaTAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAg                                                                               >  2:3333184/1‑91 (MQ=255)

              aaaaTAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGt                                                                              <  2:4839178/91‑1 (MQ=255)

               aaaTAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTa                                                                             >  1:501940/1‑91 (MQ=255)

                  taataTTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTc                                                                          <  2:340266/91‑1 (MQ=255)

                    atatTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCaa                                                                        >  2:2668781/1‑91 (MQ=255)

                        ttGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGtt                                                                    <  1:5498824/91‑1 (MQ=255)

                         tGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTa                                                                   <  1:3052809/91‑1 (MQ=255)

                         tGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTa                                                                   <  1:1704026/91‑1 (MQ=255)

                          gATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAg                                                                  <  2:2506311/91‑1 (MQ=255)

                          gATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAg                                                                  <  2:6901006/91‑1 (MQ=255)

                           atatatTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAgg                                                                 <  1:3715973/91‑1 (MQ=255)

                           atatatTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAgg                                                                 <  2:112214/91‑1 (MQ=255)

                             atatTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTg                                                               <  1:2932834/91‑1 (MQ=255)

                             atatTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTg                                                               <  2:5026075/91‑1 (MQ=255)

                              tatTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGc                                                              <  2:1299152/91‑1 (MQ=255)

                                ttCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCtt                                                            >  1:1328753/1‑91 (MQ=255)

                                 tCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTg                                                           <  2:4165738/91‑1 (MQ=255)

                                 tCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTg                                                           <  1:1609890/91‑1 (MQ=255)

                                    aGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGtt                                                        >  2:4535204/1‑91 (MQ=255)

                                     gTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTa                                                       <  2:4946559/91‑1 (MQ=255)

                                       aaaGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGTAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAac                                                     <  2:2861976/91‑1 (MQ=255)

                                        aaGCATAAAAAAATTCCCGAGCCCTATAACAAGGGGTTCGGGAATTTTTTATGGTTTAAATTAGTACTCAATGTTAGGTGCTTGGTTAaca                                                    >  2:562434/1‑91 (MQ=255)

                                        aaGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAaca                                                    >  1:756486/1‑91 (MQ=255)

                                        aaGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAaca                                                    >  1:679902/1‑91 (MQ=255)

                                         aGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAacac                                                   >  1:5315797/1‑91 (MQ=255)

                                            aTAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGtt                                                >  1:4628773/1‑91 (MQ=255)

                                            aTAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGtt                                                <  2:2403278/91‑1 (MQ=255)

                                             tAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTc                                               <  2:2224565/91‑1 (MQ=255)

                                              aaaaaaaTTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCt                                              >  2:5413352/1‑91 (MQ=255)

                                               AAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCtt                                             <  2:5798995‑M1/91‑1 (MQ=255)

                                                AAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTg                                            <  1:3521218‑M1/91‑1 (MQ=255)

                                                 AAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTgg                                           >  2:1705310‑M1/1‑91 (MQ=255)

                                                  AAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGt                                          >  1:2565772‑M1/1‑91 (MQ=255)

                                                    ATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAt                                        >  2:6048501‑M1/1‑91 (MQ=255)

                                                    ATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAt                                        <  2:118584‑M1/91‑1 (MQ=255)

                                                     TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTCGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAtt                                       >  2:6489538‑M1/1‑91 (MQ=255)

                                                     TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAtt                                       <  1:1221852‑M1/91‑1 (MQ=255)

                                                     TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAtt                                       <  2:4586909‑M1/91‑1 (MQ=255)

                                                      TCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAttt                                      <  1:2792268‑M1/91‑1 (MQ=255)

                                                      TCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAttt                                      >  2:312573‑M1/1‑91 (MQ=255)

                                                      TCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAttt                                      >  1:210535‑M1/1‑91 (MQ=255)

                                                      TCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAttt                                      >  2:6388045‑M1/1‑91 (MQ=255)

                                                      TCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAttt                                      >  2:5884257‑M1/1‑91 (MQ=255)

                                                       CCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAtttt                                     <  1:573948‑M1/91‑1 (MQ=255)

                                                        CCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAttttt                                    <  1:3131093‑M1/91‑1 (MQ=255)

                                                        CCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTCAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAttttt                                    >  2:6770523‑M1/1‑91 (MQ=255)

                                                         CGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTg                                            >  1:32865‑M1/1‑82 (MQ=255)

                                                         CGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAtttttt                                   >  2:810729‑M1/1‑91 (MQ=255)

                                                         CGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAtttttt                                   >  2:1579779‑M1/1‑91 (MQ=255)

                                                         CGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTAtttttt                                   >  1:4368395‑M1/1‑91 (MQ=255)

                                                          GAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTa                                  <  2:2164582‑M1/91‑1 (MQ=255)

                                                          GAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTa                                  <  2:3242776‑M1/91‑1 (MQ=255)

                                                          GAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTa                                  >  2:2940269‑M1/1‑91 (MQ=255)

                                                          GAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTa                                  >  1:4461117‑M1/1‑91 (MQ=255)

                                                          GAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTATTGGTATTTTTTa                                  <  2:6844119‑M1/91‑1 (MQ=255)

                                                           AGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTaa                                 >  2:6142318‑M1/1‑91 (MQ=255)

                                                           AGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTaa                                 <  1:4152557‑M1/91‑1 (MQ=255)

                                                               ccttgttatagtgctcgggaattttttATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGc                             >  2:4705580‑M2/28‑91 (MQ=255)

                                                               cTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGc                             >  1:6596563/1‑91 (MQ=255)

                                                                 ataACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGa                           <  2:6545200/91‑1 (MQ=255)

                                                                 ataACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGa                           >  2:4015782/1‑91 (MQ=255)

                                                                 ataACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGa                           <  2:426900/91‑1 (MQ=255)

                                                                   aaCAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAg                         <  1:1031728/91‑1 (MQ=255)

                                                                    aCAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGt                        >  2:4326716/1‑91 (MQ=255)

                                                                    aCAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGt                        >  2:1424918/1‑91 (MQ=255)

                                                                     cAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGta                       >  2:5259636/1‑91 (MQ=255)

                                                                      aaGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGtat                      >  1:6329996/1‑91 (MQ=255)

                                                                        ggTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATaa                    <  1:6041395/91‑1 (MQ=255)

                                                                        ggTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATaa                    >  1:3891629/1‑91 (MQ=255)

                                                                        ggTGTTCCGGAATATTTTATGGTTTAATTTAGTACTCACTGTCAGGTGCTTGGTTAACACATTCTTGGTATTTTTTATATGCGAAGTATaa                    <  1:5561532/91‑1 (MQ=255)

                                                                         gtgtTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATaaa                   >  2:3751469/1‑91 (MQ=255)

                                                                         gtgtTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATaaa                   >  2:5743716/1‑91 (MQ=255)

                                                                         gtgtTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATaaa                   >  1:916601/1‑91 (MQ=255)

                                                                           gtTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATAAAcc                 >  1:178493/1‑91 (MQ=255)

                                                                            ttCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATAAACCg                >  1:4101952/1‑91 (MQ=255)

                                                                              cgggaattttttATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATAAACCGcc              >  2:20341‑M2/13‑91 (MQ=255)

                                                                              cgggaattttttATGGTTTAATTTAGTACGCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATAAACCGcc              <  1:6181300‑M2/79‑1 (MQ=255)

                                                                               gggaattttttATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATAAACCGCCa             <  1:1166942‑M2/80‑1 (MQ=255)

                                                                                ggaattttttATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATAAACCGCCaa            <  1:2177493‑M2/81‑1 (MQ=255)

                                                                                ggaattttttATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATAAACCGCCaa            <  2:3490684‑M2/81‑1 (MQ=255)

                                                                                   attttttATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATAAACCGCCAACTa         >  1:3421148‑M2/8‑91 (MQ=255)

                                                                                     tttttATGTTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTATCATGTTCTTGGTATTTTTTAAATGCGAAGTATAAACCGCCAACTAAt       >  2:5124037‑M2/6‑91 (MQ=255)

                                                                                       tttATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATAAACCGCCAACTAATGt     <  2:6290406‑M2/88‑1 (MQ=255)

                                                                                        ttATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATAAACCGCCAACTAATGtt    >  1:5175655‑M2/3‑91 (MQ=255)

ATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTTGGTATTTTTTAAATGCGAAGTATAAACCGCCAACTAATGTTAA  >  USA300TCH1516_ALE/2772586‑2772766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.