| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1878614 | 108 (0.870) | 7 (0.070) | 5/222 | NT | 6.3% | intergenic (+73/+44) | USA300HOU_RS09320/ebh_2 | Ferredoxin‑‑NADP reductase/Extracellular matrix‑binding protein ebh |
| ? | USA300TCH1516_ALE | = 1878633 | 114 (1.060) | intergenic (+92/+25) | USA300HOU_RS09320/ebh_2 | Ferredoxin‑‑NADP reductase/Extracellular matrix‑binding protein ebh | |||||
TGGTTATAATATTACAAGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1878457‑1878614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgaccttaatataacGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCCATTGATGCATGTGAGTAATGTCCGGCATATAATCCAGCG < USA300TCH1516_ALE/1878633‑1878496 TGGTTATAATATTACAAGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAA > 1:614859/1‑141 GGTTATAATATTACAAGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAA > 3:372974/1‑141 GTTATNATATTACAAGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAA < 3:149614/141‑1 ATAATATTACAAGTGCACTCGTAACATGACATGTCGGAAGATTATATGCCGTACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCAATAAAAAAAAAATGA < 2:223655/141‑1 ATAATATTACAAGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGCTCAACTTTTTCATTCAAATAAAAATGA > 2:468372/1‑141 TAATATTACAAGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGAC > 3:226397/1‑141 TAATATTACAAGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGAC > 1:938954/1‑141 ATATTAGAAGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCT > 4:375353/1‑141 ATATTACAAGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCT > 3:124758/1‑141 ATATTACAAGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCGCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCT > 2:600749/1‑141 TATTACAAGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTT < 3:1065/141‑1 AGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAA > 3:326154/1‑141 AGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAA > 2:911632/1‑141 AGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAA > 3:326165/1‑141 ACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACaaaa < 4:108556/141‑5 ACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACGACACTTTTTA < 4:400373/141‑1 ATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTA < 4:322875/141‑1 ATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTA < 1:761270/141‑1 TATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGT < 1:691541/141‑1 ATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTC < 1:984333/141‑1 ATGCCCGACATTACTCACATGCGTCATTGGGATAATAATATAAAATTTGGTCCAATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGAGCTTAATATATCGACACTTTTTAGTGACTCAGTTATATTAAGGTC < 4:66076/141‑1 TGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCA < 2:569294/141‑1 AATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCCATTGATGCATGTGAGTAATGTCCGG < 2:1004167/141‑1 AATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCAATTGATGCATGTGAGTAATGTCCGG > 2:741507/1‑141 TGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCCATTGATGCATGTGAGTAATGTCCGGCA < 2:738403/141‑1 TGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCCATTGATGCATGTGAGTAATGTCCGGCA < 1:754938/141‑1 TGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCCATTGATGCATGTGAGTAATGTCCGGCA < 1:754886/141‑1 TGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTAATTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCCATTGATGTATGTGAGTAATGACCGGCA < 1:128206/141‑1 GACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCCATTGATGCATGTGAGTAATGTCCGGCAT < 2:999141/141‑1 CTTAATATAACGACACTTTTTAGTGATTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACGAAATTTTATACTATTATTCCATTGATGCATGTGTGTAATGTCGGGCATATA > 1:313097/1‑141 TAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCCATTGATGCATGTGAGTAATGTCCGGCATATAATCCAGC < 3:274659/141‑1 AACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCCATTGATGCATGTGAGTAATGTCCGGCATATAATCCAGCG < 3:178142/141‑1 AACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCCATTGATGCATGTGAGTAATGTCCGGCATATAATCCAGCG < 3:440477/141‑1 AACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCCATTGATGCATGTGAGTAATGTCCGGCATATAATCCAGCG < 1:897415/141‑1 AACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCCATTGATGCATGTGAGTAATGTCCGGCATATAATCCAGCG < 1:388628/141‑1 TGGTTATAATATTACAAGTGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1878457‑1878614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgaccttaatataacGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTTTATTTGAATGAAAAAGTTGATCTACTAAAGAGAATCGAACCAAATTTTATACTATTATTCCATTGATGCATGTGAGTAATGTCCGGCATATAATCCAGCG < USA300TCH1516_ALE/1878633‑1878496 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |