BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1878614	108 (0.870)	7 (0.070)	5/222	NT	6.3%	intergenic (+73/+44)	USA300HOU_RS09320/ebh_2	Ferredoxin‑‑NADP reductase/Extracellular matrix‑binding protein ebh
*	?	USA300TCH1516_ALE	= 1878633	114 (1.060)	7 (0.070)	5/222	NT	6.3%	intergenic (+92/+25)	USA300HOU_RS09320/ebh_2	Ferredoxin‑‑NADP reductase/Extracellular matrix‑binding protein ebh

Only 100 of 154 total aligned reads displayed.

TGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAA  >  USA300TCH1516_ALE/1878475‑1878754

  cACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGa                                                                                                                                           >  1:281397/1‑141 (MQ=255)

   aCTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACaaaa                                                                                                                                          <  4:108556‑M1/141‑5 (MQ=255)

     tCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTc                                                                                                                                        >  2:59777/1‑141 (MQ=255)

      cGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCa                                                                                                                                       >  1:356365/1‑141 (MQ=255)

         aaCAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAGTAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTa                                                                                                                                    >  3:273494/1‑141 (MQ=255)

              gACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAg                                                                                                                               >  2:125959/1‑141 (MQ=255)

                  tGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTc                                                                                                                           >  2:567960/1‑141 (MQ=255)

                     cGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCgtt                                                                                                                        <  1:897415‑M2/141‑4 (MQ=255)

                     cGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCgtt                                                                                                                        <  3:178142‑M2/141‑4 (MQ=255)

                      gCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCgtta                                                                                                                       <  3:274659‑M2/141‑5 (MQ=255)

                             tataTGCCCGACATTACACACATGCATCAATGGAATAATAGTATAAAATTTCGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAATCACTAAAAAGTGTCgttatattaag                                                                                                                >  1:313097‑M2/1‑130 (MQ=255)

                               tatGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACgacactttttagtgactcagttatattaaggt                                                                                                              <  1:691541‑M1/141‑33 (MQ=255)

                                atGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACgacactttttagtgactcagttatattaaggtc                                                                                                             <  1:984333‑M1/141‑34 (MQ=255)

                                atGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCgttatattaaggtc                                                                                                             <  2:999141‑M2/141‑15 (MQ=255)

                                atGCCCGACATTACTCACATGCGTCATTGGGATAATAATATAAAATTTGGTCCAATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGAGCTTAATATATCgacactttttagtgactcagttatattaaggtc                                                                                                             <  4:66076‑M1/141‑34 (MQ=255)

                                 tGCCGGTCATTACTCACATACATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAATTAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCgttatattaaggtca                                                                                                            <  1:128206‑M2/141‑16 (MQ=255)

                                 tGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCgttatattaaggtca                                                                                                            <  2:738403‑M2/141‑16 (MQ=255)

                                 tGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCgttatattaaggtca                                                                                                            <  1:754938‑M2/141‑16 (MQ=255)

                                   ccGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCgttatattaaggtcatt                                                                                                          <  2:1004167‑M2/141‑18 (MQ=255)

                                     ggACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTc                                                                                                        <  2:501308/141‑1 (MQ=255)

                                          ttACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTaa                                                                                                   <  3:254738/141‑1 (MQ=255)

                                          ttACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTAACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTaa                                                                                                   <  4:289957/141‑1 (MQ=255)

                                           tACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAAt                                                                                                  >  2:97361/1‑141 (MQ=255)

                                            aCTCACATACATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAATTAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAAtt                                                                                                 <  1:940543/141‑1 (MQ=255)

                                               cacaTGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATg                                                                                              >  2:539551/1‑141 (MQ=255)

                                                  aTGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGAtt                                                                                           >  1:439558/1‑141 (MQ=255)

                                                    gCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCt                                                                                         >  4:325853/1‑141 (MQ=255)

                                                    gCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCt                                                                                         >  2:883559/1‑141 (MQ=255)

                                                     cATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCtt                                                                                        <  1:433874/141‑1 (MQ=255)

                                                       tCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCtttt                                                                                      <  2:285190/141‑1 (MQ=255)

                                                       tCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCtttt                                                                                      >  1:951856/1‑141 (MQ=255)

                                                       tCAATGGAATAATAGTATAAAATTTGGTTCGATTCGCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCtttt                                                                                      <  2:253073/141‑1 (MQ=255)

                                                        cAATGGAATAATAGTATAAAATTTGGTTCGTTTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCttttt                                                                                     >  4:388588/1‑141 (MQ=255)

                                                         aaTGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTc                                                                                    >  1:950088/1‑141 (MQ=255)

                                                           tGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGt                                                                                  <  1:835070/141‑1 (MQ=255)

                                                           tGGAATAATAGTATAAAATTTGGATCGATTCTCTTTAGTAGATCAACTTTTTCATTCAGATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGt                                                                                  <  1:47716/141‑1 (MQ=255)

                                                            ggAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGtt                                                                                 >  1:940762/1‑141 (MQ=255)

                                                             gAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGttt                                                                                >  1:579089/1‑141 (MQ=255)

                                                             gAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGttt                                                                                <  1:177671/141‑1 (MQ=255)

                                                                 aataGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAg                                                                            <  2:587684/141‑1 (MQ=255)

                                                                 aataGTATAAAATTTGGTTCGATTCTCTTTAGTAAATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTAAGAAAATAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAg                                                                            <  2:468478/141‑1 (MQ=255)

                                                                  ataGTATAAAATTTGGTTCGATTCACTTTAGTAGAACAACTTTTCCATTCAAATAAAAATGCCCTTAATATAACTGAGTCACTAAAAAGTGTAGTTATCTTCAGGTCACTTCGTTACTTATGATTCTTTTTCGtttttgat                                                                           >  4:354094/1‑138 (MQ=255)

                                                                   taGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTa                                                                          <  4:101345/141‑1 (MQ=255)

                                                                   taGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTa                                                                          <  4:251612/141‑1 (MQ=255)

                                                                   taGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTa                                                                          <  2:383005/141‑1 (MQ=255)

                                                                   taGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTa                                                                          <  2:835612/141‑1 (MQ=255)

                                                                    aGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTAc                                                                         >  1:558327/1‑141 (MQ=255)

                                                                    aGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTAc                                                                         <  4:187223/141‑1 (MQ=255)

                                                                    aGTATAAAATTTGGTTCGATGCTCTTTAGTAGATCAACTATTTCATTCAAATCAAACTGACCTTCATATCACTGCGTCACTCAAACGTGTCGTTATATTAACGTCTTTCCATTAACTATGATTCTCTGTCCTTTTTCGttc                                                                         >  2:93784/1‑139 (MQ=255)

                                                                         aaaaTTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGtctt                                                                    <  2:1071725/141‑1 (MQ=255)

                                                                          aaaTGTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATCTTAAGGTCCTTTCGTTCATTATGATTCTTTTTCGTTGTTAGTACGtcttc                                                                   <  4:128126/141‑1 (MQ=255)

                                                                            aTTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTa                                                                 >  2:215152/1‑141 (MQ=255)

                                                                            aTTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGATCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTa                                                                 >  4:114539/1‑141 (MQ=255)

                                                                             tttGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAg                                                                >  1:683973/1‑141 (MQ=255)

                                                                                 gTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATTTCTGAGTGACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTGAAGTATGCTTCTTTTTCGTTTTGAGTACGTCTTCTAGCTaa                                                            <  4:226397/141‑1 (MQ=255)

                                                                                    cGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTTTTTCGTCTTCTAGCTAACaa                                                         >  2:215217/1‑141 (MQ=255)

                                                                                      aTTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAg                                                       <  4:383487/141‑1 (MQ=255)

                                                                                          tctTTAGTAGATCAACTTTTTCATTCAATTAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGc                                                   <  3:381260/141‑1 (MQ=255)

                                                                                          tctTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGc                                                   <  4:273494/141‑1 (MQ=255)

                                                                                           ctTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCTTTTTTTGTATTTCTTCTAGCTCACATATCCGCa                                                  >  2:144162/1‑141 (MQ=255)

                                                                                             ttAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCAcc                                                >  3:148670/1‑141 (MQ=255)

                                                                                                    aTCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATc                                         >  1:723556/1‑141 (MQ=255)

                                                                                                      cAACTTTTTCATTCAATTAAAAATGACCTTAATATATCTGAGTCACTTAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAATGCCGCACCTGTAATCAg                                       <  2:291588/141‑1 (MQ=255)

                                                                                                      cAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAg                                       <  4:150680/141‑1 (MQ=255)

                                                                                                       aaCTTTTTCATTCAATTAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGt                                      <  2:160217/141‑1 (MQ=255)

                                                                                                       aaCTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGt                                      >  2:72348/1‑141 (MQ=255)

                                                                                                        aCTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTg                                     <  1:1023826/141‑1 (MQ=255)

                                                                                                         cTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGc                                    <  4:148670/141‑1 (MQ=255)

                                                                                                            tttCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCCGTTCaaa                                 >  1:872711/1‑141 (MQ=255)

                                                                                                            tttCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCCGTGCaaa                                 <  1:861075/141‑1 (MQ=255)

                                                                                                              tcattcaAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAAtt                               <  4:326165/141‑1 (MQ=255)

                                                                                                              tcattcaAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAAtt                               >  1:765574/1‑141 (MQ=255)

                                                                                                                attcaAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCt                             <  2:219137/141‑1 (MQ=255)

                                                                                                                    aaaTAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCa                         >  3:147883/1‑141 (MQ=255)

                                                                                                                        aaaaaTGACCTTAATATAACTGAGTCACTAAAAAGTGACGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATgg                     >  2:268259/1‑141 (MQ=255)

                                                                                                                         aaaaTGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCTCCTGTAATCAGTGCAAATTCTTTCAATGGt                    <  2:1061382/141‑1 (MQ=255)

                                                                                                                         aaaaTGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGt                    <  1:1019032/141‑1 (MQ=255)

                                                                                                                          aaaTGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTa                   >  2:186173/1‑141 (MQ=255)

                                                                                                                          aaaTGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTa                   >  3:81456/1‑141 (MQ=255)

                                                                                                                          aaaTGACCTTAATATAACTGAGTCACTAAAAAGAGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTa                   >  2:345526/1‑141 (MQ=255)

                                                                                                                           aaTGACCTTAATATAACgacactttttagtgactcagttatattaaggtcatttttatttgaatgaaaaagttgatctactaaagagaatcgaaccaaattttatactattattccattgatgcatgtgagtaatgtccgg                  <  2:1004167‑M1/141‑125 (MQ=255)

                                                                                                                           aaTGACCTTAATATAACgacactttttagtgactcagttatattaaggtcatttttatttgaatgaaaaagttgatctactaaagagaatcgaaccaaattttatactattattcaattgatgcatgtgagtaatgtccgg                  >  2:741507‑M1/1‑17 (MQ=255)

                                                                                                                             tGACCTTAATATAACgacactttttagtgactcagttatattaaggtcatttttatttgaatgaaaaagttgatctactaaagagaatcgaaccaaattttatactattattccattgatgcatgtgagtaatgtccggca                <  1:754938‑M1/141‑127 (MQ=255)

                                                                                                                             tGACCTTAATATAACgacactttttagtgactcagttatattaaggtcatttttatttgaatgaaaaagttgatctactaaagagaatcgaaccaaattttatactattattccattgatgcatgtgagtaatgtccggca                <  1:754886‑M1/141‑127 (MQ=255)

                                                                                                                             tGACCTTAATATAACgacactttttagtgactcagttatattaaggtcatttttaattgaatgaaaaagttgatctactaaagagaatcgaaccaaattttatactattattccattgatgtatgtgagtaatgaccggca                <  1:128206‑M1/141‑127 (MQ=255)

                                                                                                                             tGACCTTAATATAACTGAGTCACTAAAAAGTGTCgttatattaaggtcatttttatttgaatgaaaaagttgatctactaaagagaatcgaaccaaattttatactattattccattgatgcatgtgagtaatgtccggca                <  2:569294‑M2/141‑108 (MQ=255)

                                                                                                                              gACCTTAATATAACTGAGTCACTAAAAAGTGTCgttatattaaggtcatttttatttgaatgaaaaagttgatctactaaagagaatcgaaccaaattttatactattattccattgatgcatgtgagtaatgtccggcat               <  1:984333‑M2/141‑109 (MQ=255)

                                                                                                                              gACCTTAATATAACTGAGTCACTAAAAAGTGTCgatatattaagctcatttttatttgaatgaaaaagttgatctactaaagagaattggaccaaattttatattattatcccaatgacgcatgtgagtaatgtcgggcat               <  4:66076‑M2/141‑109 (MQ=255)

                                                                                                                                 cTTAATATAACgacactttttagtgattcagttatattaaggtcatttttatttgaatgaaaaagttgatctactaaagagaatcgaacgaaattttatactattattccattgatgcatgtgtgtaatgtcgggcatata            >  1:313097‑M1/1‑11 (MQ=255)

                                                                                                                                   tAATATAACTGAGTCACTAAAAAGTGTCgttatattaaggtcatttttatttgaatgaaaaagttgatctactaaagagaatcgaaccaaattttatactattattccattgatgcatgtgagtaatgtccggcatataat          <  1:761270‑M2/141‑114 (MQ=255)

                                                                                                                                   tAATATAACTGAGTCACTAAAAAGTGTCgttatattaaggtcatttttatttgaatgaaaaagttgatctactaaagagaatcgaaccaaattttatactattattccattgatgcatgtgagtaatgtccggcatataat          <  4:322875‑M2/141‑114 (MQ=255)

                                                                                                                                   tAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTGTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTc          >  3:7947/1‑141 (MQ=255)

                                                                                                                                     atatAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCt        <  2:742360/141‑1 (MQ=255)

                                                                                                                                        taACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCa     >  4:95283/1‑141 (MQ=255)

                                                                                                                                         aaCgacactttttagtgactcagttatattaaggtcatttttatttgaatgaaaaagttgatctactaaagagaatcgaaccaaattttatactattattccattgatgcatgtgagtaatgtccggcatataatccagcg    <  1:388628‑M1/141‑139 (MQ=255)

                                                                                                                                         aaCgacactttttagtgactcagttatattaaggtcatttttatttgaatgaaaaagttgatctactaaagagaatcgaaccaaattttatactattattccattgatgcatgtgagtaatgtccggcatataatccagcg    <  1:897415‑M1/141‑139 (MQ=255)

                                                                                                                                         aaCgacactttttagtgactcagttatattaaggtcatttttatttgaatgaaaaagttgatctactaaagagaatcgaaccaaattttatactattattccattgatgcatgtgagtaatgtccggcatataatccagcg    <  3:440477‑M1/141‑139 (MQ=255)

                                                                                                                                         aaCgacactttttagtgactcagttatattaaggtcatttttatttgaatgaaaaagttgatctactaaagagaatcgaaccaaattttatactattattccattgatgcatgtgagtaatgtccggcatataatccagcg    <  3:178142‑M1/141‑139 (MQ=255)

                                                                                                                                          aCTGAGTCACTAAAAAGTGTCTTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCC‑TCAGaa  >  2:495776/1‑141 (MQ=255)

                                                                                                                                          aCTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGa   >  3:106343/1‑141 (MQ=255)

TGCACTCGTAACAGGACATGTCGCTGGATTATATGCCGGACATTACTCACATGCATCAATGGAATAATAGTATAAAATTTGGTTCGATTCTCTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAA  >  USA300TCH1516_ALE/1878475‑1878754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.