| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2525575 = | 131 (1.050) | 3 (0.030) | 3/228 | NT | 2.8% | intergenic (‑147/+83) | sirB/ytmI | Sirohydrochlorin ferrochelatase/putative N‑acetyltransferase YtmI |
| ? | USA300TCH1516_ALE | 2525640 = | 95 (0.860) | intergenic (‑212/+18) | sirB/ytmI | Sirohydrochlorin ferrochelatase/putative N‑acetyltransferase YtmI | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGTGTGATCATGCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2525729‑2525575‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atatatcggtcgcttGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGATCACACCTAAATCGCCATCATCATTTTCATGTTCGCTGTATATTTCATAACCTCTT > USA300TCH1516_ALE/2525640‑2525778 GGTGTGATCATGCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCA > 4:50545/1‑141GGTGTGATCATGCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCA > 1:677154/1‑141 GTGTGATCATGCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCAT < 3:34737/141‑1 TGTGATCATGCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATA > 1:739193/1‑141 GATCATGCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATAT > 2:148040/1‑141 CATGCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTGGAGTAGGGATTCATATATCGG < 1:660377/141‑1 ATGCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTGATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGT < 1:847600/141‑1 ATGCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGT < 1:300959/141‑1 TGCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTC > 4:307162/1‑141 TGCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTC > 1:310838/1‑141 TGCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTC < 2:350996/141‑1 GCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCCACCACCATTTTAAGCTAATAATATCCACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCG < 3:130456/141‑1 GCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCG > 1:1073304/1‑141 GCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCG < 2:339991/141‑1 CGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGC < 1:438880/141‑1 CGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGC < 2:108108/141‑1 CGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGC < 2:876881/141‑1 GCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCT < 1:925447/141‑1 CAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTT < 2:978093/141‑1 CAAAATATTGATACCCCAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTT < 1:326688/141‑1 CCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATG > 4:257849/1‑141 GATATATCAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGgt > 3:353241/1‑139 TGCTTACTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGATCACACCTAAA > 1:846244/1‑141 ATATATCGGTCGCTTGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGATCACACCTAAATCGCCATCATCATTTTCATGTTCGCTGTATAT > 1:774780/1‑141 ATATATCGGTCGCTTGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGATCACACCTAAATCGCCATCATCATTTTCATGTTCGCTGTATAT > 2:449450/1‑141 ATATATCGGTCGCTTGTAGGGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGATCACACCTAAATCGCCATCATCATTTTCATGTTCGCTGTATAT > 2:449430/1‑141 TATCGGTCGCTTGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGATCACACCTAAATCGCCATCATCATTTTCATGTTCGCTGTATATTTC > 2:105652/1‑141 TCGGTCGCTTGTAGTGTATATTCTTATCTTAAAATCGTGGTTGGCCTAATATTGTTACCTCAAACCGCTCGGGTATCAATACTTTGCGCATGATCACACCTACATCGCCATCATCATTTTCATGTTCGCTGTATACTTCAT > 4:446797/1‑141 TCGGTCGCTTGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGATCACACCTAAATCGCCATCATCATTTTCATGTTCGCTGTATATTTCAT > 2:171660/1‑141 GTCGCTTGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGATCACACCTAAATCGCCATCATCATTTTCATGTTCGCTGTATATTTCATAAC < 2:300959/141‑1 CGCTTGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGATCACACCTAAATCGCCATCATCATTTTCATGTTCGCTGTATATTTCATAACCT < 2:31824/141‑1 CGCTTGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGATCACACCTAAATCGCCATCATCATTTTCATGTTCGCTGTATATTTCATAACCT < 1:657929/141‑1 TTGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGATCACACCTAAATCGCCATCATCATTTTCATGTTCGCTGTATATTTCATAACCTCTT > 2:563306/1‑141 TTGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGATCACACCTAAATCGCCATCATCATTTTCATGTTCGCTGTATATTTCATAACCTCTT < 4:423850/141‑1 GGTGTGATCATGCGCAAAGTATTGATACCCGAGCGCTTTGACGAAACAATATTAGGCCAACCACCATTTTAAGATAATAATATACACTACAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2525729‑2525575‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atatatcggtcgcttGTAGTGTATATTATTATCTTAAAATGGTGGTTGGCCTAATATTGTTTCGTCAAAGCGCTCGGGTATCAATACTTTGCGCATGATCACACCTAAATCGCCATCATCATTTTCATGTTCGCTGTATATTTCATAACCTCTT > USA300TCH1516_ALE/2525640‑2525778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |