| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2527385 = | 122 (0.980) | 3 (0.030) | 3/236 | NT | 2.9% | intergenic (‑134/+83) | nirC/USA300TCH1516_02411 | Nitrite transporter NirC/hypothetical protein |
| ? | USA300TCH1516_ALE | 2527456 = | 87 (0.760) | intergenic (‑205/+12) | nirC/USA300TCH1516_02411 | Nitrite transporter NirC/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCAATTGGTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTATCTCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2527534‑2527385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatctcgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGAAATAG > USA300TCH1516_ALE/2527456‑2527592 TGCAATTGGTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATT < 3:394769/141‑1 GCAATTGGTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTT > 4:164570/1‑141 CAATTGGTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTA < 4:86557/141‑1 CAATTGGTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTA < 2:461901/141‑1 TTGGTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTATCT > 1:916890/1‑141 TGGTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTATCTC > 2:1057486/1‑141 GGTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTATCTCG < 1:452064/141‑1 GGTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTATCTCG > 1:468523/1‑141 GGTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTATCTCG > 3:257532/1‑141 GTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTATCTCGC < 1:324668/141‑1 GTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTATCTCGC < 3:222060/141‑1 TTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGAGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTATCTCGCT > 2:862540/1‑141 TACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCA > 1:536515/1‑141 TAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTG > 3:163143/1‑141 GATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAAT > 2:539257/1‑141 TTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACT < 3:259340/141‑1 TTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACT > 1:262161/1‑141 TTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACT < 2:602301/141‑1 TTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACT > 1:262198/1‑141 TTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGATACT > 1:192024/1‑141 TATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAGTTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGA > 1:652707/1‑141 TCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATGAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGAAA > 1:854825/1‑141 TCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGAAA < 2:1048253/141‑1 TCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGAAA < 4:363982/141‑1 tttttTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCCATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACACTTTGACGTTACTGAAAT > 2:317148/6‑141 tTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGAAAT < 4:274666/140‑1 CTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTCTTAGGTACACATTTCTACGTTACTGAAAT > 4:374077/1‑141 CGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGAAATAG < 1:580923/141‑1 CGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACGGAAATAG < 1:860003/141‑1 TGCAATTGGTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAGTAATACTTTACATAAAGCGAGATAAAATGAGCGTCGTAATATCTTAAATCATAAAGATATTAGCCAATCACGCGATTTATCTCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2527534‑2527385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatctcgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGAAATAG > USA300TCH1516_ALE/2527456‑2527592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |