BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2527385 =	122 (0.980)	3 (0.030)	3/236	NT	2.9%	intergenic (‑134/+83)	nirC/USA300TCH1516_02411	Nitrite transporter NirC/hypothetical protein
*	?	USA300TCH1516_ALE	2527456 =	87 (0.760)	3 (0.030)	3/236	NT	2.9%	intergenic (‑205/+12)	nirC/USA300TCH1516_02411	Nitrite transporter NirC/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 124 total aligned reads displayed.

AATTGATAGATTAAATTTCAGAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGAAATAG  >  USA300TCH1516_ALE/2527317‑2527592

aaTTGATAGATTAAATTTCAGAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCttt                                                                                                                                         >  3:307893/1‑141 (MQ=255)

 cagtgtatttgcatatggtttacattacttttcaaatttaaaaaagaataagtaatactttacataaAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTa                                                                                                                                        >  3:163143‑M1/68‑141 (MQ=255)

  ttGATAGATTAAATTTCAGAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTAt                                                                                                                                       >  1:657709/1‑141 (MQ=255)

     aTAGATTAAATTTCAGAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTa                                                                                                                                    >  2:305821/1‑141 (MQ=255)

          tgcatatggtttacattacttttcaaatttaaaaaagaataagtaatactttacataaAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTa                                                                                                                               >  1:536515‑M1/59‑141 (MQ=255)

               tttCAGAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACt                                                                                                                          >  3:90174/1‑141 (MQ=255)

               tttCAGAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACt                                                                                                                          <  1:419851/141‑1 (MQ=255)

               ttccAGAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACt                                                                                                                          <  1:987200/138‑1 (MQ=255)

                ttCAGAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACtt                                                                                                                         <  2:291213/141‑1 (MQ=255)

                ttCAGAAAAATCTTTTTATGCTCTCGAAAATGTAGTTTGCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAAGCGCGTTATGATTTAAGATATGACGACGCTCATTTTATCTCGCTTTATGTAAATTATTGCtt                                                                                                                         <  4:56880/141‑1 (MQ=255)

                 tCAGAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTa                                                                                                                        >  4:228819/1‑141 (MQ=255)

                    gAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTc                                                                                                                     <  1:450811/141‑1 (MQ=255)

                    gAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTc                                                                                                                     >  3:175903/1‑141 (MQ=255)

                    gAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCCCATTTTATCTCGCTTTATGTAAAGTATTACTTATTc                                                                                                                     >  1:1017324/1‑141 (MQ=255)

                    gAAAAATCTTTTTATGCTCTCGAAAATTTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTTGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTc                                                                                                                     >  2:772091/1‑141 (MQ=255)

                       aaaTCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCttt                                                                                                                  <  1:436588/141‑1 (MQ=255)

                         aTCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCttttt                                                                                                                <  1:735660/141‑1 (MQ=255)

                         aTCTTTTTATGCACTCAAAAATGTATTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATGGGCTAATCTCTTTATGATTTAAGCTAGTACGTTGCACATTTTATCTCGCTTTATGTAAAGTTTCACTTATTCttttt                                                                                                                <  2:76620/141‑1 (MQ=255)

                            tttttATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTaa                                                                                                             >  1:732709/1‑141 (MQ=255)

                            tttttATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTaa                                                                                                             <  3:351150/141‑1 (MQ=255)

                            tttttATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTaa                                                                                                             <  1:493455/141‑1 (MQ=255)

                                 aTTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTg                                                                                                        <  1:134675/141‑1 (MQ=255)

                                     tctcGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAAGCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGaaaa                                                                                                    >  1:934480/1‑141 (MQ=255)

                                      ctcGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAg                                                                                                   <  3:54990/141‑1 (MQ=255)

                                      ctcGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAg                                                                                                   <  1:692679/141‑1 (MQ=255)

                                      ctcGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTATAAAATAAAAAAg                                                                                                   <  2:408586/141‑1 (MQ=255)

                                           aaaTGTAGTTTTCTTGCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATg                                                                                              <  1:898598/141‑1 (MQ=255)

                                            aaTGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGt                                                                                             >  2:232177/1‑141 (MQ=255)

                                              tGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTaa                                                                                           <  2:305926/141‑1 (MQ=255)

                                                tAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAAc                                                                                         <  4:291120/141‑1 (MQ=255)

                                                    tttctttcATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCata                                                                                     <  1:124918/141‑1 (MQ=255)

                                                     ttctttcATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCatat                                                                                    <  3:18072/141‑1 (MQ=255)

                                                     ttcttaaATAAAAACAGAGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTAAAAAAAAAAAAAAAATAATGTAAACCatat                                                                                    <  2:446783/141‑1 (MQ=255)

                                                      tctttcATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAACAGTAATGTAAACCATATg                                                                                   >  1:333125/1‑141 (MQ=255)

                                                        tactttacataaagcgagataaaatgagcgtcgtaatatcttaaatcataaagatattagccaatcacgcgatttatctcgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCa                                                                                 >  1:536515‑M2/84‑141 (MQ=255)

                                                            aTAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATa                                                                             >  3:242330/1‑141 (MQ=255)

                                                            aTAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATa                                                                             >  1:584071/1‑141 (MQ=255)

                                                            aTAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATa                                                                             <  2:523369/141‑1 (MQ=255)

                                                             tttttacacCGAGATAAATCGCGTGATTTTCTAATATCTTTATGATTGTAGATATTTCGACGCTCATTTTATCTCTCTTTATTTAAAGTATTACTTATTCTTTTTTAAATTGGAAAAGTAATGTAAACCATATGCAAATac                                                                            >  2:102362/6‑141 (MQ=255)

                                                             tAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATac                                                                            <  1:405481/141‑1 (MQ=255)

                                                              aaaaaCAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATaca                                                                           >  1:187413/1‑141 (MQ=255)

                                                               aaaaCAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATacac                                                                          <  2:975462/141‑1 (MQ=255)

                                                               aaaaCAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATacac                                                                          <  1:60234/141‑1 (MQ=255)

                                                                 taaagcgagataaaatgagcgtcgtaatatcttaaatcataaagatattagccaatcacgcgatttatctcgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTg                                                                        >  3:163143‑M2/75‑141 (MQ=255)

                                                                 aaCAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTg                                                                        >  2:168978/1‑141 (MQ=255)

                                                                 aaCAGCGAGATAAATCGCGTGATTGGCTAATATATTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCACATGCCAATACACTg                                                                        >  1:412865/1‑141 (MQ=255)

                                                                  aCAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGGAAAGTAATGTAAACCATATGCAAATACACTGt                                                                       <  1:253662/141‑1 (MQ=255)

                                                                    AGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACTCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTaa                                                                     >  2:862540‑M1/1‑141 (MQ=255)

                                                                     GCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAAc                                                                    <  1:324668‑M1/141‑1 (MQ=255)

                                                                     GCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAAc                                                                    <  3:222060‑M1/141‑1 (MQ=255)

                                                                      CGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAAcc                                                                   <  1:452064‑M1/141‑1 (MQ=255)

                                                                       GAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCa                                                                  >  2:1057486‑M1/1‑141 (MQ=255)

                                                                        AGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCaa                                                                 >  1:916890‑M1/1‑141 (MQ=255)

                                                                         gataaaatgagcgtcgtaatatcttaaatcataaagatattagccaatcacgcgatttatctcgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAAt                                                                >  2:539257‑M2/67‑141 (MQ=255)

                                                                             AATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCa                                                            <  3:394769‑M1/141‑1 (MQ=255)

                                                                                cgcgTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTa                                                         <  2:920440/141‑1 (MQ=255)

                                                                                cgcgTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTa                                                         >  3:122228/1‑141 (MQ=255)

                                                                                cgcgTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTa                                                         >  2:1042755/1‑141 (MQ=255)

                                                                                  cgggATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACg                                                       <  1:1122/138‑1 (MQ=255)

                                                                                  cgTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTTTAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACg                                                       >  2:954854/1‑141 (MQ=255)

                                                                                  cgTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACg                                                       <  3:327013/141‑1 (MQ=255)

                                                                                      aTTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTaaa                                                   <  1:328291/141‑1 (MQ=255)

                                                                                        tGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAAt                                                 <  1:674153/141‑1 (MQ=255)

                                                                                          gCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTTAATTGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCATTACGTAAAATaa                                               >  2:1039756/1‑141 (MQ=255)

                                                                                          gCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATaa                                               <  2:1084300/141‑1 (MQ=255)

                                                                                             aaTATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAAcc                                            <  2:945271/141‑1 (MQ=255)

                                                                                             aaTATCTTTATGATTTAAGATATTACGACGCTCATTTCATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGACAGGGAAGGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAAcc                                            >  1:782199/1‑141 (MQ=255)

                                                                                               tatCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCtt                                          <  2:432815/141‑1 (MQ=255)

                                                                                                atCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTta                                         >  1:498275/1‑141 (MQ=255)

                                                                                                 tCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTtat                                        <  2:803224/141‑1 (MQ=255)

                                                                                                  cTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTCAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTtata                                       <  1:819560/141‑1 (MQ=255)

                                                                                                  cTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTtata                                       <  1:726902/141‑1 (MQ=255)

                                                                                                   tttATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAATTTTTTTTAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATaa                                      >  2:221894/1‑141 (MQ=255)

                                                                                                     tATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACt                                    <  2:536831/141‑1 (MQ=255)

                                                                                                     tATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACt                                    >  1:436070/1‑141 (MQ=255)

                                                                                                             aaGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAgg                            >  1:420218/1‑141 (MQ=255)

                                                                                                                 tatTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTTAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTATGTaca                        >  4:63846/1‑141 (MQ=255)

                                                                                                                 tatTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTCCGTAAAATAAACCTTATAACTTTATTAGGTaca                        >  1:99651/1‑141 (MQ=255)

                                                                                                                  atTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTacac                       >  3:143388/1‑141 (MQ=255)

                                                                                                                  atTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTacac                       >  1:776283/1‑141 (MQ=255)

                                                                                                                   ttACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTAcaca                      >  2:53759/1‑141 (MQ=255)

                                                                                                                     acgacgCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACAtt                    >  2:146693/1‑141 (MQ=255)

                                                                                                                      cgacgCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACAttt                   >  2:399606/1‑141 (MQ=255)

                                                                                                                      cgacgCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACAttt                   >  1:226444/1‑141 (MQ=255)

                                                                                                                      cgacgCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACAttt                   <  3:393765/141‑1 (MQ=255)

                                                                                                                       gacgCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACAtttt                  <  1:779414/141‑1 (MQ=255)

                                                                                                                              aTTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTa           <  1:1022153/141‑1 (MQ=255)

                                                                                                                               ttttATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTAc          <  2:100207/141‑1 (MQ=255)

                                                                                                                               ttttATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTAc          <  4:201748/141‑1 (MQ=255)

                                                                                                                                tttatctcgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACt         <  3:259340‑M2/130‑1 (MQ=255)

                                                                                                                                tttatctcgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACt         >  1:262198‑M2/12‑141 (MQ=255)

                                                                                                                                tttatctcgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACt         <  2:602301‑M2/130‑1 (MQ=255)

                                                                                                                                tttatctcgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGATACt         >  1:192024‑M2/12‑141 (MQ=255)

                                                                                                                                  tatctcgctTTATGTAAAGTATTACTTATTCTTTTTTAAGTTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGa       >  1:652707‑M2/10‑141 (MQ=255)

                                                                                                                                    tctcgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGaaa     <  2:1048253‑M2/134‑1 (MQ=255)

                                                                                                                                    tctcgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGaaa     <  4:363982‑M2/134‑1 (MQ=255)

                                                                                                                                     ttttttTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCCATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACACTTTGACGTTACTGAAAt    >  2:317148‑M2/7‑141 (MQ=255)

                                                                                                                                     ttcgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGAAAt    <  4:274666‑M2/135‑1 (MQ=255)

                                                                                                                                     ctcgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTCTTAGGTACACATTTCTACGTTACTGAAAt    >  4:374077‑M2/7‑141 (MQ=255)

                                                                                                                                       cgctTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACGGAAATag  <  1:860003‑M2/137‑1 (MQ=255)

AATTGATAGATTAAATTTCAGAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTTTAAATTTGAAAAGTAATGTAAACCATATGCAAATACACTGTAACCAATTGCAGTACGTAAAATAAACCTTATAACTTTATTAGGTACACATTTTGACGTTACTGAAATAG  >  USA300TCH1516_ALE/2527317‑2527592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.