| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2628271 = | 123 (0.990) | 4 (0.030) | 4/242 | NT | 3.5% | intergenic (+141/+70) | sarU/gtaB | HTH‑type transcriptional regulator SarU/UTP‑‑glucose‑1‑phosphate uridylyltransferase |
| ? | USA300TCH1516_ALE | 2628335 = | 103 (0.880) | intergenic (+205/+6) | sarU/gtaB | HTH‑type transcriptional regulator SarU/UTP‑‑glucose‑1‑phosphate uridylyltransferase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACTACCATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2628418‑2628271‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcttTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATTCTATGGTAGTTTTAACGAAGCCTAATTTTTCTCCAACGTCATAACGTTCGCCTTCGAAGTCATATG > USA300TCH1516_ALE/2628335‑2628474 ACTACCATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGT < 1:573416/141‑1ACTACCATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGT > 3:268949/1‑141 TACCATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCA > 4:58319/1‑141 CCATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATG < 1:56300/141‑1 CATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGC < 2:810222/141‑1 CATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGC < 2:948472/141‑1 CATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGC < 4:215962/141‑1 gTAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGCATTATTAACGCAATACGTGTATTACAGGAAAATCATGATACTCTGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCT > 1:1029197/2‑141 TTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCTTTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATAT > 1:707239/1‑141 TAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCTTTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATT > 2:114594/1‑141 GCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCTTTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATTCTATG > 1:717757/1‑141 ATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCTTTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATTCTATGGT > 1:968702/1‑141 ATGCTTTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATTCTATGGTAGTTTTAACGAAGCCTAATTTTTCTCCAACGTCATAACGTTCGCCTTCGAAGTC < 2:370755/141‑1 TTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATTCTATGGTAGTTTTAACGAAGCCTAATTTTTCTCCAACGTCATAACGTTCGCCTTCGAAGTCATATG < 2:25465/141‑1 ACTACCATAGAATATGCATTGAAAGATGACAGTATGCGAGAAGAATTAACACGATTTATTAAAGCATTAGGTTTATAACATTAAAAGCATGATACTCAGTAAAATTGGAACACGAAATGGTGAACTAAATTGAATGAGTGTCATGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2628418‑2628271‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcttTTAATGTTATAAACCTAATGCTTTAATAAATCGTGTTAATTCTTCTCGCATACTGTCATCTTTCAATGCATATTCTATGGTAGTTTTAACGAAGCCTAATTTTTCTCCAACGTCATAACGTTCGCCTTCGAAGTCATATG > USA300TCH1516_ALE/2628335‑2628474 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |