New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 2937673 (1.050)8 (0.010) 5/268 46.9 1.3% intergenic (‑263/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 2949 593 (0.960)intergenic (‑275/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 682 total aligned reads displayed.

TTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAG  >  NC_012417/2798‑3076
                                                                                                                                           |                                                                                                                                           
tttttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAc                                                                                                                                             <  2:167757/140‑1 (MQ=255)
 ttttacttgtATGAATTCGATTTTATCTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATCAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACg                                                                                                                                            <  1:122134/140‑1 (MQ=255)
   ttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTCTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                          <  1:164705/140‑1 (MQ=255)
    taattttGTTAATTTGATTTTATTTGATTATTCTTTTGACTTTTTAGAAAGTTTTATTTATTGATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgt                                                                                                                                         <  2:80514/140‑1 (MQ=255)
    taattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATACAGTTCTATTCACATTAATTTATTTAGGTTTAGATGGTCATAAAAAGAAGAAGGAATATGTTGTTTTTTGAAACGaat                                                                                                                                         >  2:160210/1‑138 (MQ=255)
     aatgttGTTAATGCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgtg                                                                                                                                        <  1:47322/140‑1 (MQ=255)
        tatGTTAATGTGATTTGATTTGATAACCCTTTTGACTGTTTAGAAAGGTTTTTTTATTCATTTGTTTACACATTCATTTATTTAGGTATATATGGTCATAAAAAGAAGAAGGAATAGCTTGTTTTTTGAAACGAGTGTGa                                                                                                                                     <  2:148354/138‑1 (MQ=255)
         ttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGaa                                                                                                                                    <  2:100063/140‑1 (MQ=255)
          tGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAAc                                                                                                                                   <  2:257688/140‑1 (MQ=255)
           gTTAATTCTATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                                  <  1:41344/140‑1 (MQ=255)
              aaTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGt                                                                                                                               <  2:233786/140‑1 (MQ=255)
                ttCGATTTTATTTGATAATCGTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATGAATTTATTTAGGTTTAGAGGGGCATAAAAAGAAGAAGTAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGttt                                                                                                                             <  2:44647/140‑1 (MQ=255)
                ttCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGttt                                                                                                                             <  1:239145/140‑1 (MQ=255)
                ttCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTAAGTTAGTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGttt                                                                                                                             <  1:179148/140‑1 (MQ=255)
                ttCGATTTGATTTGATAAGTCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTGAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGttt                                                                                                                             <  2:240696/140‑1 (MQ=255)
                 tCGATTTTATTTGATATTCGTTTTGACTTTTTAGAATGTTTTATTTATTGCTTTGCGTGCTCGTGAGTTTTTTTTGGTGTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttc                                                                                                                            <  2:119176/140‑1 (MQ=255)
                 tCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttc                                                                                                                            >  1:73823/1‑140 (MQ=255)
                  cGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                           <  1:249186/140‑1 (MQ=255)
                    aTTTTATTTGATAATCCTTTTGATTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATGTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                         <  2:152316/140‑1 (MQ=255)
                    aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                         <  2:30827/140‑1 (MQ=255)
                    aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                         <  2:87286/140‑1 (MQ=255)
                    aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGCTTTATAGGATCATAAACAGTAGAAGTAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                         <  2:229024/140‑1 (MQ=255)
                     ttttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                                                                        <  1:44132/140‑1 (MQ=255)
                       ttATTTTATAATACTTTTGACTTTTTAGAAAG‑TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                                                                     <  2:140209/140‑1 (MQ=255)
                         aTTTGATAATCCTTTTGACTTTTTAGGAAGGTTTATTTATTCATTGGTTTTCACATTAATTTATGTAGGTTTAGAGGGTCAGAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTGTCTtcttgtc                                                                                                                    <  2:133468/140‑1 (MQ=255)
                         aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                    >  2:124431/1‑140 (MQ=255)
                         aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                    >  1:236659/1‑140 (MQ=255)
                         aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                    <  1:168693/140‑1 (MQ=255)
                          tttGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                   <  1:52580/140‑1 (MQ=255)
                           ttGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTGTAGAGGGACGGAAAAATACGGTTTTTTAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtctt                                                                                                                  <  2:187478/140‑1 (MQ=37)
                            tGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGCAACGAGTGTGAACGAGTTTCTtcttgtcttg                                                                                                                 >  1:1927/1‑140 (MQ=255)
                             gATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGa                                                                                                                <  1:216524/140‑1 (MQ=255)
                             gATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGa                                                                                                                <  1:185961/140‑1 (MQ=255)
                                 aTCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACt                                                                                                            <  1:253098/140‑1 (MQ=255)
                                 aTCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACt                                                                                                            <  1:18100/140‑1 (MQ=255)
                                 aTCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGATTGAACGAGTTTCTTATTGTCTTGATACt                                                                                                            >  2:62898/1‑140 (MQ=255)
                                 aTCATTTTGACTGGTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACt                                                                                                            <  1:126581/140‑1 (MQ=255)
                                   ccTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtat                                                                                                          >  1:141437/1‑140 (MQ=255)
                                    cTTTTGACTTTTTATAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtata                                                                                                         <  2:181461/140‑1 (MQ=255)
                                     ttttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtatat                                                                                                        <  1:213360/140‑1 (MQ=255)
                                          aCTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaaa                                                                                                   <  2:49555/140‑1 (MQ=255)
                                          aCTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGATTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaaa                                                                                                   <  1:132757/140‑1 (MQ=255)
                                           cTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAAt                                                                                                  >  1:7687/1‑140 (MQ=255)
                                            tttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATCCTCTTTAGAAATa                                                                                                 >  1:36890/1‑140 (MQ=255)
                                            tttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATa                                                                                                 >  1:100090/1‑140 (MQ=255)
                                              tttAGAATGTGTGATGTATTTATTGGTTTTCACAGTAATTTATATAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                               <  2:156324/140‑1 (MQ=38)
                                               ttAGAAAGTTTTATTTATTCATTGGTTTTAACATTAATTTTTTGTCCTTTAGATATTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                                                                              <  2:254488/140‑1 (MQ=37)
                                                 cgcatgTTTTATGTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCg                                                                                            <  1:110378/135‑1 (MQ=255)
                                                  gAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGa                                                                                           >  1:128496/1‑140 (MQ=255)
                                                   aaaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAt                                                                                          <  2:164745/140‑1 (MQ=255)
                                                   aaaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAt                                                                                          >  1:80860/1‑140 (MQ=255)
                                                     atttttATTTATTCATTGGTTTTCACTTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATATAAATAACTCGAttt                                                                                        <  1:241479/138‑1 (MQ=255)
                                                     aGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAttt                                                                                        >  2:197310/1‑140 (MQ=255)
                                                     aGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGAGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAttt                                                                                        <  1:136975/140‑1 (MQ=255)
                                                     aGTTTTATTTATTCATTGGTTTTCACATTAATTTATTCAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTATGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAttt                                                                                        >  1:69712/1‑140 (MQ=255)
                                                      gTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                                                                       >  1:257976/1‑140 (MQ=255)
                                                        tttatttaTTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGATACGAGTGTGAACGAGTTTCTTCTTGTTTTGATACTATATAGAAATAACTCGAtttttt                                                                                     >  2:211401/1‑138 (MQ=255)
                                                        tttatttaTTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCtttttttt                                                                                     >  2:116657/1‑138 (MQ=255)
                                                                    atGGTTTTCATATTAATTTATTTAGGTAAAAAAAAAAAAAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGt                                                                         <  2:94196/139‑1 (MQ=37)
                                                                       gtgttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAAc                                                                      <  2:204541/137‑1 (MQ=255)
                                                                       gTTTTCACATTAATTTATCTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAAc                                                                      >  2:25076/1‑140 (MQ=255)
                                                                        ttttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGAGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTAGATTATATATATATAGATGTAACt                                                                     >  2:3392/1‑140 (MQ=255)
                                                                         ttttACATTAATTTATATATGTTTATATACTTATAAAAAAAAGAAGTAATCGGTTGTTTTTTTAAACGAGTTTGTACGTCTTTCTTCTTTTCTTGATACTATATAGAAATAACTCTATTTTATATATATAGCTGTAACTg                                                                    <  2:144795/140‑1 (MQ=255)
                                                                            cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGCAGAAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATACCTCGATTTTATATATATAGCTGTAACTGTTg                                                                 >  2:217270/1‑140 (MQ=255)
                                                                            cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTg                                                                 >  1:116000/1‑140 (MQ=255)
                                                                            cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTg                                                                 >  1:210834/1‑140 (MQ=255)
                                                                            cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTg                                                                 >  2:245118/1‑140 (MQ=255)
                                                                                ttAATTTATTTAGTTTGAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGatat                                                             <  1:198153/140‑1 (MQ=255)
                                                                                 tAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAtt                                                            <  1:86370/140‑1 (MQ=255)
                                                                                    tttatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTGTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACa                                                         <  1:267/140‑1 (MQ=255)
                                                                                     ttatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAg                                                        <  1:91313/140‑1 (MQ=255)
                                                                                      tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgt                                                       >  1:143835/1‑140 (MQ=255)
                                                                                        tttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtgt                                                     >  1:63885/1‑140 (MQ=255)
                                                                                               ttAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACg                                              <  1:243992/140‑1 (MQ=255)
                                                                                                 agagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTTAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgtg                                            <  2:178239/140‑1 (MQ=255)
                                                                                                 agagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgtg                                            <  1:155907/140‑1 (MQ=255)
                                                                                                 agagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgtg                                            >  1:84885/1‑140 (MQ=255)
                                                                                                  gagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgtgt                                           <  2:75233/140‑1 (MQ=255)
                                                                                                   agGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                          <  1:105688/140‑1 (MQ=255)
                                                                                                   agGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                          <  1:56348/140‑1 (MQ=255)
                                                                                                   agGCTCATAAAAAGAAGAAGGAATAGGTTTTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                          <  1:159814/140‑1 (MQ=255)
                                                                                                    gggTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGttt                                         <  2:67665/140‑1 (MQ=255)
                                                                                                           aaaaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAAAGAGTTTCTTGTTGTCTTGATACTATATAAAAATAACTCCATTTTATATCTTTAGTTCTTAATTCTGATATTACATTGTTTAAACTTGTTTTTGTGCg                                  >  2:55012/1‑140 (MQ=25)
                                                                                                            aaaaGAAGGAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTTTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGt                                 <  2:222055/140‑1 (MQ=255)
                                                                                                              aagaaggagGAATAGGTTGTATGTTCAAAGGAGGGTGAAGGAGTTTCTTCTTGTCTTGATACTATATAGAAAGAGCTCGATTTGATAGATAGAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGa                               >  2:174905/1‑140 (MQ=255)
                                                                                                                 aagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAg                            <  1:174795/140‑1 (MQ=255)
                                                                                                                  agaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                           <  1:229955/140‑1 (MQ=255)
                                                                                                                  agaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                           <  1:227009/140‑1 (MQ=255)
                                                                                                                            ggTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAg                            >  1:203697/1‑129 (MQ=255)
                                                                                                                            ggTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGAc                 >  1:189490/1‑140 (MQ=255)
                                                                                                                              ttgttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACaa               >  1:32392/1‑140 (MQ=255)
                                                                                                                                gttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATa             >  2:38963/1‑140 (MQ=255)
                                                                                                                                gttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATa             >  1:221699/1‑140 (MQ=255)
                                                                                                                                  tttttGAAAGTAGTGTGAACGAGTTTCTTCTTGTGTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTAAATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaa           <  2:190699/140‑1 (MQ=255)
                                                                                                                                  tttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaa           <  2:108948/140‑1 (MQ=255)
                                                                                                                                   ttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaa          >  1:219076/1‑140 (MQ=255)
                                                                                                                                   ttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaa          <  1:150329/140‑1 (MQ=255)
                                                                                                                                      tGAAACGAGTGTGAACGATTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAc       <  1:147116/140‑1 (MQ=255)
                                                                                                                                      tGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAc       >  2:127470/1‑140 (MQ=255)
                                                                                                                                          aCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCa   <  1:97285/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                           
TTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAG  >  NC_012417/2798‑3076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.