| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 829838 = | 113 (1.150) | 6 (0.070) | 4/142 | NT | 6.1% | coding (315/675 nt) | USA300HOU_RS04060 | hypothetical protein |
| ? | USA300TCH1516_ALE | 829892 = | 83 (0.950) | coding (369/675 nt) | USA300HOU_RS04060 | hypothetical protein | |||||
CCGGGTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/829935‑829838‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgccaatTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATTTT > USA300TCH1516_ALE/829892‑829981 CCGGGTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATG > 1:3335912/1‑91CCGGGTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATG > 1:2572435/1‑91 CGGGTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGT > 1:757024/1‑91 CGGGTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGT < 1:1193185/91‑1 GGGTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTG < 1:2111353/91‑1 GGGTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTG < 1:2590909/91‑1 GGGTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTG < 1:3520119/91‑1 GGTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGC < 1:3436216/91‑1 GGTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGC > 1:4054582/1‑91 GGTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGC > 1:3483671/1‑91 GGTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGC > 1:4054753/1‑91 GTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGCC < 1:3451390/91‑1 GTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGCC < 1:3451397/91‑1 TTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGCCA < 1:2171358/91‑1 TAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGCCAA < 1:2013770/91‑1 AAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGCCAAT > 1:1942634/1‑91 AAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGCCAAT > 1:1945509/1‑91 GCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGCCAATTCCTTCTTCGCCGGCACATGAT > 1:3118286/1‑91 GCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGCCAATTCCTTCTTCGCCGGCACATGAT > 1:3118160/1‑91 ACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCG > 1:435508/1‑91 CAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGG > 1:1913005/1‑91 CAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGG > 1:1912799/1‑91 AAGATGTTTGTGGTATTTCAATCAAATGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTAC > 1:662090/1‑91 TGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGAT > 1:109643/1‑91 TGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGAT > 1:1008104/1‑91 GTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATA < 1:2292466/91‑1 TGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAA > 1:2792017/1‑91 TGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAA < 1:2775790/91‑1 CAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGAT < 1:1800692/91‑1 AATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATT > 1:160616/1‑91 AATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATT > 1:160157/1‑91 ATTCCTTCTTCGCCGGCGCATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATTT > 1:429972/1‑91 ATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATTT < 1:3156071/91‑1 ATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATTT < 1:3156307/91‑1 ATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATTT < 1:2887357/91‑1 ATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATTT < 1:2886820/91‑1 ATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATTT > 1:2141073/1‑91 ATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATTT < 1:1741296/91‑1 TTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATTTT < 1:3369752/91‑1 CCGGGTTAAATGTTCTAGATAAATCATGTGCCGGCGAAGAAGGAATTGGCACAATATAGTCATAAGATGTTTGTGGTATTTCAATCAAATGTGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/829935‑829838‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgccaatTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATTTT > USA300TCH1516_ALE/829892‑829981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |