| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 829838 = | 113 (1.150) | 6 (0.070) | 4/142 | NT | 6.1% | coding (315/675 nt) | USA300HOU_RS04060 | hypothetical protein |
| ? | USA300TCH1516_ALE | 829892 = | 83 (0.950) | coding (369/675 nt) | USA300HOU_RS04060 | hypothetical protein | |||||
Only 100 of 158 total aligned reads displayed.
ACAATTATATTGTCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTT > USA300TCH1516_ALE/829748‑829928 | aaaatcttatcaaagcgaatccctttagcttttagtactgcttctaccgggttaaatgttctagataaatcatgtgccggcgaagaaggaa < 1:3369752‑M1/1‑1 (MQ=255) aaatcttatcaaagcgaatccctttagcttttagtactgcttctaccgggttaaatgttctagataaatcatgtgccggcgaagaaggaAt < 1:1741296‑M1/2‑1 (MQ=255) aaatcttatcaaagcgaatccctttagcttttagtactgcttctaccgggttaaatgttctagataaatcatgtgccggcgaagaaggaAt < 1:3156071‑M1/2‑1 (MQ=255) aaatcttatcaaagcgaatccctttagcttttagtactgcttctaccgggttaaatgttctagataaatcatgtgccggcgaagaaggaAt > 1:2141073‑M1/90‑91 (MQ=255) aaatcttatcaaagcgaatccctttagcttttagtactgcttctaccgggttaaatgttctagataaatcatgtgccggcgaagaaggaAt < 1:2887357‑M1/2‑1 (MQ=255) aatcttatcaaagcgaatccctttagcttttagtactgcttctaccgggttaaatgttctagataaatcatgtgccggcgaagaaggaAtt > 1:160157‑M1/89‑91 (MQ=255) aatcttatcaaagcgaatccctttagcttttagtactgcttctaccgggttaaatgttctagataaatcatgtgccggcgaagaaggaAtt > 1:160616‑M1/89‑91 (MQ=255) aaTTATATTGTCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAattatt > 1:78850/1‑91 (MQ=255) aTTATATTGTCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTg < 1:757816/91‑1 (MQ=255) ttATATTGTCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTgg < 1:3901261/91‑1 (MQ=255) tataTTGTCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGc > 1:2781009/1‑91 (MQ=255) tataTTGTCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGc < 1:2193364/91‑1 (MQ=255) ttatcaaagcgaatccctttagcttttagtactgcttctaccgggttaaatgttctagataaatcatgtgccggcgaagaaggaATTGGca > 1:2792017‑M1/85‑91 (MQ=255) ttatcaaagcgaatccctttagcttttagtactgcttctaccgggttaaatgttctagataaatcatgtgccggcgaagaaggaATTGGca < 1:2775790‑M1/7‑1 (MQ=255) atatTGTCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGca < 1:304270/91‑1 (MQ=255) tatcaaagcgaatccctttagcttttagtactgcttctaccgggttaaatgttctagataaatcatgtgccggcgaagaaggaATTGGcac < 1:2292466‑M1/8‑1 (MQ=255) tatTGTCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGcac > 1:1653416/1‑91 (MQ=255) atcaaagcgaatccctttagcttttagtactgcttctaccgggttaaatgttctagataaatcatgtgccggcgaagaaggaATTGGcaca > 1:1008104‑M1/83‑91 (MQ=255) atcaaagcgaatccctttagcttttagtactgcttctaccgggttaaatgttctagataaatcatgtgccggcgaagaaggaATTGGcaca > 1:109643‑M1/83‑91 (MQ=255) atTGTCAATTTCAATATGACGGTTTAATGAAATAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGcaca < 1:386988/91‑1 (MQ=255) ttGTCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACAt < 1:1517007/91‑1 (MQ=255) ttGTCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACAt < 1:4091967/91‑1 (MQ=255) gTCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACAttt > 1:1702960/1‑91 (MQ=255) gTCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACAttt > 1:4033020/1‑91 (MQ=255) tCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATttg < 1:1466409/91‑1 (MQ=255) cAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATttga < 1:2114444/91‑1 (MQ=255) cAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATttga < 1:3486047/91‑1 (MQ=255) aaTTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATttgat < 1:317646/91‑1 (MQ=255) aaTTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATttgat < 1:2378987/91‑1 (MQ=255) aTTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATttgatt < 1:848110/91‑1 (MQ=255) tttCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATttgattg < 1:336255/91‑1 (MQ=255) tttCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATttgattg < 1:2361235/91‑1 (MQ=255) cAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGaaa < 1:1130197/91‑1 (MQ=255) aaTATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAAt > 1:2352261/1‑91 (MQ=255) aaTATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAAt > 1:2351064/1‑91 (MQ=255) aaTATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAAt > 1:1807369/1‑91 (MQ=255) atatGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATa > 1:2726551/1‑91 (MQ=255) atatGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATa > 1:2894528/1‑91 (MQ=255) tatGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATAc < 1:1993125/91‑1 (MQ=255) atGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATAcc < 1:2037492/91‑1 (MQ=255) gACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACcac < 1:1138890/91‑1 (MQ=255) gACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACcac < 1:2023770/91‑1 (MQ=255) aCGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACcaca < 1:3903614/91‑1 (MQ=255) aCGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACcaca > 1:3177400/1‑91 (MQ=255) cGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACaa < 1:1517053/91‑1 (MQ=255) ggTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACaaa > 1:1862365/1‑91 (MQ=255) ggTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACaaa > 1:1862398/1‑91 (MQ=255) gTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAAc < 1:3984206/91‑1 (MQ=255) tttAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACa < 1:1001134/91‑1 (MQ=255) tttAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACa > 1:1521928/1‑91 (MQ=255) gtactgcttctaccgggttaaatgttctagataaatcatgtgccggcgaagaaggaATTGGCACATTTGATTGAAATACCACAAACATCtt > 1:662090‑M1/57‑91 (MQ=255) aTGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCtt > 1:2337390/1‑91 (MQ=255) aTGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCtt > 1:3275669/1‑91 (MQ=255) gAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTAt > 1:991786/1‑91 (MQ=255) aaaGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATg > 1:4064084/1‑91 (MQ=255) agagATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGAc < 1:41222/91‑1 (MQ=255) agagATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGACTGAAATACCACAAACATCTTATGAc > 1:3873468/1‑91 (MQ=255) gagaTGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACt < 1:526590/91‑1 (MQ=255) agaTGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACta > 1:131520/1‑91 (MQ=255) gatACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATAtt > 1:277637/1‑91 (MQ=255) ccgggttaaatgttctagataaatcatgtgccggcgaagaaggaATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATtg > 1:1913005‑M1/45‑91 (MQ=255) ccgggttaaatgttctagataaatcatgtgccggcgaagaaggaATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATtg > 1:1912799‑M1/45‑91 (MQ=255) atACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATtg > 1:1757002/1‑91 (MQ=255) cgggttaaatgttctagataaatcatgtgccggcgaagaaggaATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATtgt > 1:435508‑M1/44‑91 (MQ=255) cATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGc > 1:1469497/1‑91 (MQ=255) cATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGc > 1:308277/1‑91 (MQ=255) aTCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGcc > 1:3832089/1‑91 (MQ=255) cAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCaa < 1:3471425/91‑1 (MQ=255) cAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCaa > 1:667210/1‑91 (MQ=255) aGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAAt < 1:2193813/91‑1 (MQ=255) gTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAAtt < 1:3640426/91‑1 (MQ=255) ataAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTcc < 1:1065184/91‑1 (MQ=255) taAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCct < 1:4116892/91‑1 (MQ=255) taAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCct < 1:660623/91‑1 (MQ=255) aaaTTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCctt < 1:922712/91‑1 (MQ=255) aaTTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCcttc > 1:1335654/1‑91 (MQ=255) aaTTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCcttc > 1:476857/1‑91 (MQ=255) ttGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGc > 1:1256862/1‑91 (MQ=255) tGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGcc < 1:2173405/91‑1 (MQ=255) aaaGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCgg > 1:2548434/1‑91 (MQ=255) aaaGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCgg > 1:2547558/1‑91 (MQ=255) atcatgtgccggcgaagaaggaATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGc > 1:3118286‑M1/23‑91 (MQ=255) aaGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGc < 1:3163652/91‑1 (MQ=255) gACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGcac < 1:1589810/91‑1 (MQ=255) aCTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGcaca < 1:1296089/91‑1 (MQ=255) cTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACAt > 1:357835/1‑91 (MQ=255) ttatttatGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGAt < 1:3269053/91‑1 (MQ=255) tatttatGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGAtt > 1:3100515/1‑91 (MQ=255) tatttatGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGAtt > 1:3100564/1‑91 (MQ=255) tatttatGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGAtt > 1:2388844/1‑91 (MQ=255) atGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCt < 1:331/91‑1 (MQ=255) tgtgAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTa > 1:1415148/1‑91 (MQ=255) gAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGaa < 1:925467/91‑1 (MQ=255) gAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGaa < 1:1535324/91‑1 (MQ=255) aaTTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAAc < 1:42199/91‑1 (MQ=255) aaTTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAAc < 1:40172/91‑1 (MQ=255) aaTTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAAc < 1:3080335/91‑1 (MQ=255) attattGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACa > 1:1219701/1‑91 (MQ=255) tattGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACAtt < 1:2071729/91‑1 (MQ=255) ATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACAttt > 1:1945509‑M1/1‑91 (MQ=255) | ACAATTATATTGTCAATTTCAATATGACGGTTTAATGAAAGAGATGATACATCAGTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTT > USA300TCH1516_ALE/829748‑829928 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |