BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	829838 =	113 (1.150)	6 (0.070)	4/142	NT	6.1%	coding (315/675 nt)	USA300HOU_RS04060	hypothetical protein
*	?	USA300TCH1516_ALE	829892 =	83 (0.950)	6 (0.070)	4/142	NT	6.1%	coding (369/675 nt)	USA300HOU_RS04060	hypothetical protein

Only 100 of 135 total aligned reads displayed.

GTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATTTT  >  USA300TCH1516_ALE/829802‑829981

gTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAAtt                                                                                           <  1:3640426/91‑1 (MQ=255)

 tataAATTTTTGAAAGACCATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTc                                                                                          >  1:1039432/1‑91 (MQ=255)

  ataAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTcc                                                                                         <  1:1065184/91‑1 (MQ=255)

   taAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCct                                                                                        <  1:660623/91‑1 (MQ=255)

   taAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCct                                                                                        <  1:4116892/91‑1 (MQ=255)

    aaaTTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCctt                                                                                       <  1:922712/91‑1 (MQ=255)

     aaTTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCcttc                                                                                      >  1:1335654/1‑91 (MQ=255)

      aTTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCcttct                                                                                     >  1:2142362/1‑91 (MQ=255)

      aTTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCcttct                                                                                     >  1:164689/1‑91 (MQ=255)

          ttGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGc                                                                                 >  1:1256862/1‑91 (MQ=255)

           tGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGcc                                                                                <  1:2173425/91‑1 (MQ=255)

           tGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGcc                                                                                <  1:2570028/91‑1 (MQ=255)

             aaaGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCgg                                                                              >  1:2548434/1‑91 (MQ=255)

              atcatgtgccggcgaagaaggaATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGc                                                                             >  1:3118160‑M1/23‑91 (MQ=255)

              atcatgtgccggcgaagaaggaATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGc                                                                             >  1:3118286‑M1/23‑91 (MQ=255)

              aaGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGc                                                                             <  1:3163652/91‑1 (MQ=255)

                gACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGcac                                                                           <  1:1589810/91‑1 (MQ=255)

                 aCTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGcaca                                                                          <  1:1296089/91‑1 (MQ=255)

                  cTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACAt                                                                         <  1:1469981/91‑1 (MQ=255)

                    attattTATGTGAATTATTGGCACATTTGTTTGAAATACCACAAACATCTTATGACTATATTGTACCAATTCCTTCTTCGCCGGCACATGa                                                                       <  1:3327040/91‑1 (MQ=255)

                    attattTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGa                                                                       >  1:3969646/1‑91 (MQ=255)

                    attattTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGa                                                                       >  1:1832613/1‑91 (MQ=255)

                    attattTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGa                                                                       <  1:3402712/91‑1 (MQ=255)

                     gccggcgaagaaggaattggcacaatatagtcataagatgtttgtggtatttcaatcaaatgtgccaatTCCTTCTTCGCCGGCACATGAt                                                                      >  1:3118286‑M2/70‑91 (MQ=255)

                      tatttatGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGAtt                                                                     >  1:3100564/1‑91 (MQ=255)

                      tatttatGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGAtt                                                                     >  1:3100515/1‑91 (MQ=255)

                      tatttatGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGAtt                                                                     >  1:2388978/1‑91 (MQ=255)

                      tatttatGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGAtt                                                                     >  1:2388844/1‑91 (MQ=255)

                          tatGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATc                                                                 >  1:661109/1‑91 (MQ=255)

                           atGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCt                                                                <  1:331/91‑1 (MQ=255)

                           atGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCt                                                                <  1:16/91‑1 (MQ=255)

                            tgtgAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTa                                                               <  1:3013143/91‑1 (MQ=255)

                            tgtgAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTa                                                               >  1:1415148/1‑91 (MQ=255)

                               gAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGaa                                                            <  1:925467/91‑1 (MQ=255)

                               gAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGaa                                                            <  1:1535324/91‑1 (MQ=255)

                                aaTTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAAc                                                           <  1:3080335/91‑1 (MQ=255)

                                aaTTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAAc                                                           <  1:3080174/91‑1 (MQ=255)

                                aaTTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAAc                                                           <  1:40172/91‑1 (MQ=255)

                                aaTTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAAc                                                           <  1:42199/91‑1 (MQ=255)

                                 attattGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACa                                                          <  1:121059/91‑1 (MQ=255)

                                 attattGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACa                                                          >  1:1219701/1‑91 (MQ=255)

                                 attattGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACa                                                          <  1:482525/91‑1 (MQ=255)

                                 attattGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACa                                                          <  1:2211428/91‑1 (MQ=255)

                                  ttattGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACAt                                                         <  1:2034470/91‑1 (MQ=255)

                                   tattGGCACATTTGATTGAAATACCACAAACATCTTATGTCTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACAtt                                                        <  1:4113982/91‑1 (MQ=255)

                                   tattGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACAtt                                                        <  1:2071729/91‑1 (MQ=255)

                                   tattGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACAtt                                                        <  1:3213782/91‑1 (MQ=255)

                                    ATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACAttt                                                       >  1:1942634‑M1/1‑91 (MQ=255)

                                     TTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTa                                                      <  1:2013770‑M1/91‑1 (MQ=255)

                                      TGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTaa                                                     <  1:2171358‑M1/91‑1 (MQ=255)

                                       GGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAAc                                                    <  1:3451397‑M1/91‑1 (MQ=255)

                                        GCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAAcc                                                   <  1:3436216‑M1/91‑1 (MQ=255)

                                        GCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAAcc                                                   >  1:3483671‑M1/1‑91 (MQ=255)

                                        GCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAAcc                                                   >  1:4054582‑M1/1‑91 (MQ=255)

                                        GCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAAcc                                                   >  1:4054753‑M1/1‑91 (MQ=255)

                                         CACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAAccc                                                  <  1:2590909‑M1/91‑1 (MQ=255)

                                         CACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAAccc                                                  <  1:2111353‑M1/91‑1 (MQ=255)

                                         CACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAAccc                                                  <  1:3520119‑M1/91‑1 (MQ=255)

                                          acaatatagtcataagatgtttgtggtatttcaatcaaatgtgccaatTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCg                                                 >  1:435508‑M2/49‑91 (MQ=255)

                                          ACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCg                                                 >  1:757024‑M1/1‑91 (MQ=255)

                                          ACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCg                                                 <  1:1193185‑M1/91‑1 (MQ=255)

                                           caatatagtcataagatgtttgtggtatttcaatcaaatgtgccaatTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCgg                                                >  1:1912799‑M2/48‑91 (MQ=255)

                                           caatatagtcataagatgtttgtggtatttcaatcaaatgtgccaatTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCgg                                                >  1:1913005‑M2/48‑91 (MQ=255)

                                           CATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCgg                                                >  1:2572435‑M1/1‑91 (MQ=255)

                                           CATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCgg                                                >  1:3335912‑M1/1‑91 (MQ=255)

                                             tttGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTa                                              <  1:2533702/91‑1 (MQ=255)

                                              ttgattgaAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAg                                             <  1:2053946/91‑1 (MQ=255)

                                               tgattgaAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGa                                            >  1:1429839/1‑91 (MQ=255)

                                                 attgaAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAg                                          >  1:1824918/1‑91 (MQ=255)

                                                  ttgaAATACCACAAACATCTTATGACTATATTGCGCCAATTCCTTCTTCGCCGGCACATTATTTATCTAGAACATTTAACCCGGTAGAAGc                                         <  1:3685031/91‑1 (MQ=255)

                                                    gaAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAg                                       >  1:2095266/1‑91 (MQ=255)

                                                     aaaTACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGt                                      >  1:2434704/1‑91 (MQ=255)

                                                      aaTACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTa                                     >  1:693328/1‑91 (MQ=255)

                                                      aaTACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTa                                     >  1:3780419/1‑91 (MQ=255)

                                                         aCCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTa                                  <  1:3812538/91‑1 (MQ=255)

                                                          ccACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTaa                                 >  1:1232754/1‑91 (MQ=255)

                                                            acaAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTaaaa                               <  1:3532401/91‑1 (MQ=255)

                                                               aaCATCTTATGACTATATTGTGCCAATTCGTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCt                            <  1:3323214/91‑1 (MQ=255)

                                                               aaCATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCt                            <  1:330441/91‑1 (MQ=255)

                                                               aaCATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCt                            >  1:1607851/1‑91 (MQ=255)

                                                                aCATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTa                           <  1:780234/91‑1 (MQ=255)

                                                                  aTCTTATGACTATATTGTGCCAATTCCTTCTTCTCCGCCACATGATCTATCTAGAACATCTAACCCGGTAGAAGCAGTACTAAAAGCTaaa                         >  1:3308605/1‑91 (MQ=255)

                                                                  aTCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTaaa                         <  1:2667819/91‑1 (MQ=255)

                                                                    cTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAgg                       <  1:4068329/91‑1 (MQ=255)

                                                                     ttATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAggg                      <  1:1308123/91‑1 (MQ=255)

                                                                     ttATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAggg                      >  1:252505/1‑91 (MQ=255)

                                                                      tATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGa                     >  1:353152/1‑91 (MQ=255)

                                                                          aCTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCg                 <  1:3399400/91‑1 (MQ=255)

                                                                             atatTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCtt              >  1:2681837/1‑91 (MQ=255)

                                                                              tatTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCttt             >  1:353505/1‑91 (MQ=255)

                                                                              tatTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCttt             <  1:2151872/91‑1 (MQ=255)

                                                                                 tgtgccaatTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGAt          >  1:1008104‑M2/10‑91 (MQ=255)

                                                                                  gtgccaatTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATa         <  1:2292466‑M2/83‑1 (MQ=255)

                                                                                   tgccaatTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATaa        >  1:2792017‑M2/8‑91 (MQ=255)

                                                                                   tgccaatTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATaa        <  1:2775790‑M2/84‑1 (MQ=255)

                                                                                      caatTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGAt     <  1:1800692‑M2/87‑1 (MQ=255)

                                                                                       aatTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGAtt    >  1:160157‑M2/4‑91 (MQ=255)

                                                                                        atTCCTTCTTCGCCGGCGCATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGAttt   >  1:429972‑M2/3‑91 (MQ=255)

                                                                                        atTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGAttt   <  1:3156307‑M2/89‑1 (MQ=255)

                                                                                        atTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGAttt   <  1:2886820‑M2/89‑1 (MQ=255)

GTATAAATTTTTGAAAGACTATTATTTATGTGAATTATTGGCACATTTGATTGAAATACCACAAACATCTTATGACTATATTGTGCCAATTCCTTCTTCGCCGGCACATGATTTATCTAGAACATTTAACCCGGTAGAAGCAGTACTAAAAGCTAAAGGGATTCGCTTTGATAAGATTTT  >  USA300TCH1516_ALE/829802‑829981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.