| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 842619 = | 103 (1.050) | 13 (0.150) | 10/144 | NT | 13.1% | intergenic (+5/‑657) | uvrA/hprK | UvrABC system protein A/HPr kinase/phosphorylase |
| ? | USA300TCH1516_ALE | 842662 = | 80 (0.900) | intergenic (+48/‑614) | uvrA/hprK | UvrABC system protein A/HPr kinase/phosphorylase | |||||
TAACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/842716‑842619‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATC > USA300TCH1516_ALE/842662‑842751 TAACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCAC > 1:3562111/1‑91TAACATAATTCTTCTTACGCATCTTTTCTTTCTACTATTCATTGCTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCAC < 1:4142849/91‑1 AACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACT > 1:601387/1‑91 AACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACT > 1:379289/1‑91 AACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACT < 1:2637742/91‑1 ATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCT < 1:1730106/91‑1 ATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCT > 1:2343337/1‑91 TAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTT < 1:740834/91‑1 TAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTT < 1:740146/91‑1 TAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTT < 1:518143/91‑1 TAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTT < 1:517516/91‑1 TAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTT > 1:2934588/1‑91 TCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAA > 1:1823865/1‑91 TAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCG > 1:156351/1‑91 TTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTATTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAA > 1:3289780/1‑91 AATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAA > 1:2186667/1‑91 TAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGA > 1:1916347/1‑91 TAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGA > 1:1280256/1‑91 AAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAA > 1:2247926/1‑91 AAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAA > 1:1164013/1‑91 AAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAT > 1:37793/1‑91 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTTGTTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTA > 1:3490091/1‑91 GATAAATTTATAACATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAG > 1:2877762/1‑91 GATAAATTTATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAG > 1:3961531/1‑91 ATAACATCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCT > 1:3384486/1‑91 CTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATA > 1:1131161/1‑91 TTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAA > 1:2621313/1‑91 TTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAA > 1:436793/1‑91 TTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATC > 1:394036/1‑91 TTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATC < 1:2274663/91‑1 TAACATAATTCTTTTTACGCATCTTTTCTTTCTACTATTCATTACTAAATTAATAAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/842716‑842619‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATC > USA300TCH1516_ALE/842662‑842751 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |