BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	842619 =	103 (1.050)	13 (0.150)	10/144	NT	13.1%	intergenic (+5/‑657)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase
*	?	USA300TCH1516_ALE	842662 =	80 (0.900)	13 (0.150)	10/144	NT	13.1%	intergenic (+48/‑614)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase

Only 100 of 127 total aligned reads displayed.

AGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCG  >  USA300TCH1516_ALE/842572‑842752

ttctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttttt                                                                                            >  1:1164013‑M1/48‑91 (MQ=255)

 tctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTtta                                                                                           >  1:1916347‑M1/47‑91 (MQ=255)

   tttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                         >  1:2186667‑M1/45‑91 (MQ=255)

   agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                         <  1:2545348/91‑1 (MQ=255)

    gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                                                                        <  1:390227/91‑1 (MQ=255)

     tttacgcatcttttctttctactattcattactaaattaataAATAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                                                                       >  1:3289780‑M1/43‑91 (MQ=255)

     tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                                                                       <  1:3056971/91‑1 (MQ=255)

     tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                                                                       <  1:3930381/91‑1 (MQ=255)

      aCTTGAACGAGATAAACAAAATTCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAt                                                                                      <  1:276135/91‑1 (MQ=255)

       cTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAtt                                                                                     >  1:1529556/1‑91 (MQ=255)

        ttGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAttt                                                                                    >  1:204123/1‑91 (MQ=255)

         cgcatcttttctttctactattcattactaaattaataAAAAGAAGCGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTa                                                                                   >  1:156351‑M1/39‑91 (MQ=255)

          gAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAg                                                                                  <  1:2216034/91‑1 (MQ=255)

           aaCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGt                                                                                 <  1:1784015/91‑1 (MQ=255)

            aCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                                                                <  1:1526419/91‑1 (MQ=255)

            aCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                                                                <  1:2674811/91‑1 (MQ=255)

              gagaTAAACAAAATACTGAAGATAAATAAGATTCAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAAt                                                                              <  1:3398994/91‑1 (MQ=255)

                gaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATgt                                                                            >  1:106536/1‑90 (MQ=255)

                gaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGa                                                                            >  1:695434/1‑91 (MQ=255)

                  tAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAt                                                                          <  1:2545149/91‑1 (MQ=255)

                    aaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtag                                                                        >  1:3495366/1‑91 (MQ=255)

                    aaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtag                                                                        >  1:3495352/1‑91 (MQ=255)

                     aCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagt                                                                       <  1:2429835/91‑1 (MQ=255)

                      cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                                                                      <  1:1644042/91‑1 (MQ=255)

                      cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                                                                      >  1:950311/1‑91 (MQ=255)

                      cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                                                                      >  1:1025356/1‑91 (MQ=255)

                       aaaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagtag                                                                     >  1:1635032/1‑91 (MQ=255)

                       aaaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagtag                                                                     >  1:408308/1‑91 (MQ=255)

                       aaaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagtag                                                                     >  1:1076683/1‑91 (MQ=255)

                        aaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTaga                                                                    <  1:2338141/91‑1 (MQ=255)

                            aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                                                                >  1:3345213/1‑91 (MQ=255)

                            aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                                                                <  1:1411384/91‑1 (MQ=255)

                            aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                                                                >  1:4001539/1‑91 (MQ=255)

                             cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                                                               <  1:1866694/91‑1 (MQ=255)

                             cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                                                               >  1:3018090/1‑91 (MQ=255)

                              tcattactaaattaataaaaagaagcgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAgaaagaaa                                                              >  1:1823865‑M2/61‑91 (MQ=255)

                              tGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAgaaagaaa                                                              <  1:633065/91‑1 (MQ=255)

                               gAAGATAAATAATATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaa                                                             >  1:3178356/1‑91 (MQ=255)

                                aaGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaag                                                            <  1:3162957/91‑1 (MQ=255)

                                aaGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaag                                                            >  1:987163/1‑91 (MQ=255)

                                 aGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaaga                                                           <  1:1856945/91‑1 (MQ=255)

                                  gATAAATAAGATTAAAGGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGAt                                                          <  1:658333/91‑1 (MQ=255)

                                  gATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGAt                                                          <  1:658057/91‑1 (MQ=255)

                                  gATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGAt                                                          <  1:1421964/91‑1 (MQ=255)

                                    taaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGc                                                        <  1:557878/91‑1 (MQ=255)

                                    taaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGc                                                        <  1:555855/91‑1 (MQ=255)

                                     taaattaataaaaagaagcgaaggataaatttataacatccttcgcttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCg                                                       >  1:156351‑M2/54‑91 (MQ=255)

                                      aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                      >  1:3228122/1‑91 (MQ=255)

                                      aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                      >  1:3227458/1‑91 (MQ=255)

                                         ttaataaaaagaagcgaaggataaatttataacatccttcacttctattTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                                   >  1:3289780‑M2/50‑91 (MQ=255)

                                         aaGATTAAAAGAAGTGAAGGGTGTTGTAAATTTACCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                                   >  1:492084/1‑91 (MQ=255)

                                         aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                                   <  1:3258096/91‑1 (MQ=255)

                                          aGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaa                                                  >  1:563289/1‑91 (MQ=255)

                                          aGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaa                                                  >  1:563354/1‑91 (MQ=255)

                                           aataaaaagaagcgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaaa                                                 >  1:2186667‑M2/48‑91 (MQ=255)

                                            aTTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAg                                                >  1:1510410/1‑91 (MQ=255)

                                             taaaaagaagcgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGa                                               >  1:1280256‑M2/46‑91 (MQ=255)

                                              aaaaagaagcgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa                                              >  1:1164013‑M2/45‑91 (MQ=255)

                                              aaaaagaagcgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa                                              >  1:2247926‑M2/45‑91 (MQ=255)

                                               aaaagaagcgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAt                                             >  1:37793‑M2/44‑91 (MQ=255)

                                                 AAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTa                                           <  1:517516‑M1/91‑1 (MQ=255)

                                                 AAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTa                                           >  1:2934588‑M1/1‑91 (MQ=255)

                                                 AAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTa                                           <  1:518143‑M1/91‑1 (MQ=255)

                                                 AAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTa                                           <  1:740834‑M1/91‑1 (MQ=255)

                                                     AGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                                       >  1:379289‑M1/1‑91 (MQ=255)

                                                     AGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                                       <  1:2637742‑M1/91‑1 (MQ=255)

                                                      gcgaaggataaatttataacatccttcacttcttttTGTTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTa                                      >  1:3490091‑M2/37‑91 (MQ=255)

                                                      GTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTa                                      >  1:3562111‑M1/1‑91 (MQ=255)

                                                      GTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGCAATGAATAGTAGAAAGAAAAGATGCGTAAGAAGAATTATGTTa                                      <  1:4142849‑M1/91‑1 (MQ=255)

                                                       tGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTaa                                     >  1:2872336/1‑91 (MQ=255)

                                                          aGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAt                                  >  1:1328473/1‑91 (MQ=255)

                                                          aGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAt                                  >  1:1679569/1‑91 (MQ=255)

                                                            gataaatttataacatccttcgcttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAg                                >  1:2877762‑M2/31‑91 (MQ=255)

                                                            gataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAg                                >  1:3961531‑M2/31‑91 (MQ=255)

                                                            gATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAg                                <  1:1979777/91‑1 (MQ=255)

                                                            gATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAg                                <  1:4021209/91‑1 (MQ=255)

                                                            gATGTTATAAATATAACCTTCGCTTCTTTTTATTAATTTAGTAATGAATGGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAg                                <  1:1081931/91‑1 (MQ=255)

                                                             aTGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAgg                               >  1:2767823/1‑91 (MQ=255)

                                                              tGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAggg                              <  1:3819699/91‑1 (MQ=255)

                                                              tGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAggg                              >  1:1713633/1‑91 (MQ=255)

                                                              tGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAggg                              <  1:3819661/91‑1 (MQ=255)

                                                              tGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAggg                              <  1:3446537/91‑1 (MQ=255)

                                                               gTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGt                             >  1:2764268/1‑91 (MQ=255)

                                                                ttATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTc                            >  1:3743755/1‑91 (MQ=255)

                                                                    aaaTTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATc                        >  1:1984052/1‑91 (MQ=255)

                                                                     ataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCt                       >  1:3384486‑M2/22‑91 (MQ=255)

                                                                     aaTTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCt                       >  1:3804011/1‑91 (MQ=255)

                                                                        ttATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTaga                    <  1:2178173/91‑1 (MQ=255)

                                                                         tATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTagag                   <  1:1766907/91‑1 (MQ=255)

                                                                         tATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTagag                   <  1:1767285/91‑1 (MQ=255)

                                                                             cTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagtagt               >  1:245593/1‑91 (MQ=255)

                                                                             cTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagtagt               >  1:154739/1‑91 (MQ=255)

                                                                               tCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTa             <  1:4068283/91‑1 (MQ=255)

                                                                               tCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTa             >  1:2056167/1‑91 (MQ=255)

                                                                                 gCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTaaa           >  1:1616682/1‑91 (MQ=255)

                                                                                     cttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATa       >  1:1131161‑M2/6‑91 (MQ=255)

                                                                                       tttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATaaa     >  1:2621313‑M2/4‑91 (MQ=255)

                                                                                         tTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATc   >  1:394036‑M2/2‑91 (MQ=255)

                                                                                         tTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATc   <  1:2274663‑M2/90‑1 (MQ=255)

                                                                                          tattaATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCg  <  1:1212614/91‑1 (MQ=255)

AGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCG  >  USA300TCH1516_ALE/842572‑842752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.