BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	842619 =	103 (1.050)	13 (0.150)	10/144	NT	13.1%	intergenic (+5/‑657)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase
*	?	USA300TCH1516_ALE	842662 =	80 (0.900)	13 (0.150)	10/144	NT	13.1%	intergenic (+48/‑614)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase

Only 100 of 154 total aligned reads displayed.

ATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAG  >  USA300TCH1516_ALE/842529‑842706

gatttatgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataa                                                                                         >  1:394036‑M1/91‑91 (MQ=255)

gatttatgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataa                                                                                         <  1:2274663‑M1/1‑1 (MQ=255)

atatTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTA                                                                                         >  1:4023682‑M1/1‑91 (MQ=255)

  tttatgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataaaa                                                                                       >  1:436793‑M1/89‑91 (MQ=255)

  tttatgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataaaa                                                                                       >  1:2621313‑M1/89‑91 (MQ=255)

  atTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAA                                                                                       <  1:2147325‑M1/91‑1 (MQ=255)

   ttGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGATGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAA                                                                                      <  1:2824010‑M1/91‑1 (MQ=255)

   ttGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAA                                                                                      >  1:744885‑M1/1‑91 (MQ=255)

    tGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAG                                                                                     <  1:3709875‑M1/91‑1 (MQ=255)

     gCTCAGACAAAGTCATCATATACAGGAAAGTATTTAACAGAAGTACTTGAATGAGATAAACAAAATACTGAAGATAAATAAGATTCAAAGA                                                                                    >  1:3864839‑M1/1‑91 (MQ=255)

     gCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGA                                                                                    <  1:3716212‑M1/91‑1 (MQ=255)

      cTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAA                                                                                   <  1:2395954‑M1/91‑1 (MQ=255)

       tCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG                                                                                  >  1:3019271‑M1/1‑91 (MQ=255)

         aGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTg                                                                                <  1:3594724/91‑1 (MQ=255)

         aGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTg                                                                                >  1:1647995/1‑91 (MQ=255)

           aCAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGaa                                                                              <  1:946339/91‑1 (MQ=255)

           aCAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGaa                                                                              <  1:946340/91‑1 (MQ=255)

           aCAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGaa                                                                              >  1:3874127/1‑91 (MQ=255)

            cAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAg                                                                             >  1:1190870/1‑91 (MQ=255)

               aGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGAt                                                                          <  1:575800/91‑1 (MQ=255)

               aGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGAt                                                                          <  1:4068301/91‑1 (MQ=255)

                gTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATg                                                                         >  1:1051381/1‑91 (MQ=255)

                gTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATg                                                                         >  1:3128670/1‑91 (MQ=255)

                  catcatATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGtt                                                                       <  1:3298094/91‑1 (MQ=255)

                   atcatATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTta                                                                      <  1:42541/91‑1 (MQ=255)

                   atcatATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTta                                                                      <  1:3654480/91‑1 (MQ=255)

                    tcatATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTtat                                                                     >  1:3524729/1‑91 (MQ=255)

                    agattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTtat                                                                     >  1:3384486‑M1/71‑91 (MQ=255)

                      atatACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGAATGTTATaa                                                                   >  1:3977864/1‑91 (MQ=255)

                        ataCAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAAt                                                                 >  1:1854484/1‑91 (MQ=255)

                            aGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTAt                                                             <  1:1853733/91‑1 (MQ=255)

                            aGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTAt                                                             >  1:3578827/1‑91 (MQ=255)

                            aGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTAt                                                             <  1:4022430/91‑1 (MQ=255)

                              gAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATcc                                                           <  1:1925140/91‑1 (MQ=255)

                               aaaGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCt                                                          >  1:1453162/1‑91 (MQ=255)

                                aaGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCtt                                                         >  1:358199/1‑91 (MQ=255)

                                 aGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTc                                                        <  1:1500994/91‑1 (MQ=255)

                                  gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCg                                                       <  1:1784160/91‑1 (MQ=255)

                                  gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCg                                                       <  1:641363/91‑1 (MQ=255)

                                   taacataattctttttacgcatcttttctttctactattcattactaaattaacaAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                      >  1:3490091‑M1/56‑91 (MQ=255)

                                   tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGtgaaggataaatttataacatccttcac                                                      <  1:3942872‑M1/91‑29 (MQ=255)

                                   tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                      <  1:732564‑M2/91‑2 (MQ=255)

                                   tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                      >  1:2502744‑M2/1‑90 (MQ=255)

                                   aatTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGcgaaggataaatttataacatccttcac                                                      <  1:462318‑M1/90‑29 (MQ=255)

                                    aTTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGct                                                     >  1:3280011‑M2/1‑89 (MQ=255)

                                    aTTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGct                                                     <  1:1884750‑M2/91‑3 (MQ=255)

                                     tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGcgaaggataaatttataacatccttcactt                                                    >  1:1335698‑M1/1‑61 (MQ=255)

                                     tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGctt                                                    <  1:487680‑M2/91‑4 (MQ=255)

                                       tAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttct                                                  <  1:493577‑M2/91‑6 (MQ=255)

                                         aaaGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGcgaaggataaatttataacatccttcacttcttt                                                <  1:3986216‑M1/91‑35 (MQ=255)

                                          attctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCtttt                                               >  1:37793‑M1/49‑91 (MQ=255)

                                           ttctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttttt                                              >  1:2247926‑M1/48‑91 (MQ=255)

                                           ttctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttttt                                              >  1:1164013‑M1/48‑91 (MQ=255)

                                            tctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTtta                                             >  1:1280256‑M1/47‑91 (MQ=255)

                                             aagTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttat                                            <  1:1110116/91‑1 (MQ=255)

                                              tttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                           >  1:2186667‑M1/45‑91 (MQ=255)

                                               gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGcgaaggataaatttataacatccttcacttcttttaatct                                          <  1:2879421‑M1/91‑41 (MQ=255)

                                               gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                          <  1:390227/91‑1 (MQ=255)

                                                tttacgcatcttttctttctactattcattactaaattaataAATAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                         >  1:3289780‑M1/43‑91 (MQ=255)

                                                tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                         >  1:3905073/1‑91 (MQ=255)

                                                tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                         <  1:3056971/91‑1 (MQ=255)

                                                 aCTTGAACGAGATAAACAAAATTCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAt                                        <  1:276135/91‑1 (MQ=255)

                                                 aCTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAt                                        <  1:276151/91‑1 (MQ=255)

                                                   ttGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAttt                                      >  1:204123/1‑91 (MQ=255)

                                                    cgcatcttttctttctactattcattactaaattaataAAAAGAAGCGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTa                                     >  1:156351‑M1/39‑91 (MQ=255)

                                                      aaCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGt                                   <  1:1784015/91‑1 (MQ=255)

                                                       aCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                  <  1:2674811/91‑1 (MQ=255)

                                                       aCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                  <  1:1526419/91‑1 (MQ=255)

                                                         gagaTAAACAAAATACTGAAGATAAATAAGATTCAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAAt                                <  1:3398994/91‑1 (MQ=255)

                                                           gaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGa                              >  1:695434/1‑91 (MQ=255)

                                                             tAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAt                            <  1:2545149/91‑1 (MQ=255)

                                                              aaaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAta                           >  1:2113717/1‑91 (MQ=255)

                                                               aaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtag                          <  1:3733244/91‑1 (MQ=255)

                                                               aaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtag                          >  1:3495366/1‑91 (MQ=255)

                                                                aCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagt                         <  1:2429835/91‑1 (MQ=255)

                                                                 cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                        <  1:1644042/91‑1 (MQ=255)

                                                                 cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                        >  1:542038/1‑91 (MQ=255)

                                                                 cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                        >  1:1025356/1‑91 (MQ=255)

                                                                  aaaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagtag                       >  1:1634896/1‑91 (MQ=255)

                                                                  aaaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagtag                       >  1:408308/1‑91 (MQ=255)

                                                                  aaaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagtag                       >  1:1076683/1‑91 (MQ=255)

                                                                       aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                  >  1:4001539/1‑91 (MQ=255)

                                                                       aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                  >  1:3487925/1‑91 (MQ=255)

                                                                       aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                  <  1:1411384/91‑1 (MQ=255)

                                                                        cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                 <  1:1866694/91‑1 (MQ=255)

                                                                        cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                 >  1:3018090/1‑91 (MQ=255)

                                                                         tGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAgaaagaaa                <  1:633065/91‑1 (MQ=255)

                                                                           aaGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaag              >  1:987163/1‑91 (MQ=255)

                                                                           aaGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaag              <  1:3162957/91‑1 (MQ=255)

                                                                             gATAAATAAGATTAAAGGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGAt            <  1:658333/91‑1 (MQ=255)

                                                                             gATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGAt            <  1:1421964/91‑1 (MQ=255)

                                                                               taaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGc          <  1:557878/91‑1 (MQ=255)

                                                                                 aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt        >  1:3228122/1‑91 (MQ=255)

                                                                                 aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt        >  1:3227458/1‑91 (MQ=255)

                                                                                 aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt        >  1:3081496/1‑91 (MQ=255)

                                                                                    aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa     >  1:3810111/1‑91 (MQ=255)

                                                                                    aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa     >  1:3304284/1‑91 (MQ=255)

                                                                                    aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa     <  1:3258096/91‑1 (MQ=255)

                                                                                     aGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttcttttaatcttatttatcttcagtattttgtttatctcgttcaagtac    <  1:2879421‑M2/91‑52 (MQ=255)

                                                                                     aGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaa    >  1:563354/1‑91 (MQ=255)

ATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAG  >  USA300TCH1516_ALE/842529‑842706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.