| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 842626 | 97 (0.990) | 9 (0.100) | 5/144 | NT | 9.7% | intergenic (+12/‑650) | uvrA/hprK | UvrABC system protein A/HPr kinase/phosphorylase |
| ? | USA300TCH1516_ALE | = 842653 | 80 (0.900) | intergenic (+39/‑623) | uvrA/hprK | UvrABC system protein A/HPr kinase/phosphorylase | |||||
ATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/842529‑842626‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagaagCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATA < USA300TCH1516_ALE/842653‑842564 ATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTA > 1:4023682/1‑91 ATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAA < 1:2147325/91‑1 TTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGATGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAA < 1:2824010/91‑1 TTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAA < 1:1404853/91‑1 TTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAA > 1:744885/1‑91 TGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAG < 1:3709875/91‑1 GCTCAGACAAAGTCATCATATACAGGAAAGTATTTAACAGAAGTACTTGAATGAGATAAACAAAATACTGAAGATAAATAAGATTCAAAGA > 1:3864839/1‑91 GCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGA < 1:3716212/91‑1 GCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAACACTGAAGATAAATAAGATTAAAAGA > 1:3858469/1‑91 CTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAA < 1:2395954/91‑1 TCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG > 1:3019271/1‑91 AAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCT < 1:4015182/91‑1 AAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCT < 1:3877778/91‑1 aATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCAC < 1:462318/90‑1 TATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATAAATTTATAACATCCTTCAC < 1:3942872/91‑1 TATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCAC < 1:462259/91‑1 TTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTT > 1:1335698/1‑91 AAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTT < 1:3986034/91‑1 AAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTT < 1:3986216/91‑1 GTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCT < 1:2879421/91‑1 AGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTA < 1:3747453/91‑1 AGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTA < 1:493577/91‑1 AAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAA < 1:487680/91‑1 AAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAA < 1:59642/91‑1 AGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAAT > 1:3280011/1‑91 AGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAAT < 1:1884750/91‑1 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATA > 1:2693813/1‑91 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATA < 1:732564/91‑1 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATA > 1:2502744/1‑91 ATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/842529‑842626‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagaagCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATA < USA300TCH1516_ALE/842653‑842564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |