BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 842626	97 (0.990)	9 (0.100)	5/144	NT	9.7%	intergenic (+12/‑650)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase
*	?	USA300TCH1516_ALE	= 842653	80 (0.900)	9 (0.100)	5/144	NT	9.7%	intergenic (+39/‑623)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase

Only 100 of 132 total aligned reads displayed.

GTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAA  >  USA300TCH1516_ALE/842563‑842743

gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCg                                                                                            >  1:2139903/1‑91 (MQ=255)

gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCg                                                                                            <  1:641363/91‑1 (MQ=255)

gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCg                                                                                            <  1:925612/91‑1 (MQ=255)

 taacataattctttttacgcatcttttctttctactattcattactaaattaacaAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                                                           >  1:3490091‑M1/56‑91 (MQ=255)

 tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                                                           >  1:2502744‑M2/1‑90 (MQ=255)

 tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                                                           >  1:2693813‑M2/1‑90 (MQ=255)

 tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                                                           <  1:732564‑M2/91‑2 (MQ=255)

  aTTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGct                                                                                          >  1:3280011‑M2/1‑89 (MQ=255)

   tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGctt                                                                                         <  1:487680‑M2/91‑4 (MQ=255)

   tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGctt                                                                                         <  1:59642‑M2/91‑4 (MQ=255)

     tAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttct                                                                                       <  1:493577‑M2/91‑6 (MQ=255)

     tAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttct                                                                                       <  1:3747453‑M2/91‑6 (MQ=255)

         ttctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttttt                                                                                   >  1:2247926‑M1/48‑91 (MQ=255)

         ttctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttttt                                                                                   >  1:1164013‑M1/48‑91 (MQ=255)

          tctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTtta                                                                                  >  1:1280256‑M1/47‑91 (MQ=255)

          tctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTtta                                                                                  >  1:1916347‑M1/47‑91 (MQ=255)

            agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                <  1:2545348/91‑1 (MQ=255)

             gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                                                               <  1:390227/91‑1 (MQ=255)

              tttacgcatcttttctttctactattcattactaaattaataAATAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                                                              >  1:3289780‑M1/43‑91 (MQ=255)

              tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                                                              <  1:3056971/91‑1 (MQ=255)

              tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                                                              <  1:3930381/91‑1 (MQ=255)

               aCTTGAACGAGATAAACAAAATTCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAt                                                                             <  1:276135/91‑1 (MQ=255)

               aCTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAt                                                                             <  1:276151/91‑1 (MQ=255)

                cTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAtt                                                                            >  1:1529556/1‑91 (MQ=255)

                 ttGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAttt                                                                           >  1:204123/1‑91 (MQ=255)

                  cgcatcttttctttctactattcattactaaattaataAAAAGAAGCGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTa                                                                          >  1:156351‑M1/39‑91 (MQ=255)

                   gAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAg                                                                         <  1:2216034/91‑1 (MQ=255)

                    aaCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGt                                                                        <  1:1784015/91‑1 (MQ=255)

                     aCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                                                       <  1:1526419/91‑1 (MQ=255)

                       gagaTAAACAAAATACTGAAGATAAATAAGATTCAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAAt                                                                     <  1:3398994/91‑1 (MQ=255)

                         tttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGa                                                                   >  1:1823865‑M1/32‑91 (MQ=255)

                         gaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATgt                                                                   >  1:106536/1‑90 (MQ=255)

                         gaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGa                                                                   >  1:695434/1‑91 (MQ=255)

                            aaaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAta                                                                >  1:2113717/1‑91 (MQ=255)

                             aaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtag                                                               <  1:3733244/91‑1 (MQ=255)

                             aaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtag                                                               >  1:3495366/1‑91 (MQ=255)

                             aaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtag                                                               >  1:3495352/1‑91 (MQ=255)

                              aCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagt                                                              <  1:2429835/91‑1 (MQ=255)

                               cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                                                             >  1:542038/1‑91 (MQ=255)

                               cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                                                             <  1:1644042/91‑1 (MQ=255)

                               cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                                                             >  1:1025356/1‑91 (MQ=255)

                               cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                                                             >  1:950311/1‑91 (MQ=255)

                                aaaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagtag                                                            >  1:408308/1‑91 (MQ=255)

                                aaaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagtag                                                            >  1:1076683/1‑91 (MQ=255)

                                aaaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagtag                                                            >  1:1634896/1‑91 (MQ=255)

                                 aaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTaga                                                           <  1:2338141/91‑1 (MQ=255)

                                     aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                                                       >  1:4001539/1‑91 (MQ=255)

                                     aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                                                       >  1:3345213/1‑91 (MQ=255)

                                     aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                                                       <  1:1411384/91‑1 (MQ=255)

                                      cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                                                      >  1:3018090/1‑91 (MQ=255)

                                      cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                                                      <  1:1866694/91‑1 (MQ=255)

                                       tGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAgaaagaaa                                                     <  1:633065/91‑1 (MQ=255)

                                        gAAGATAAATAATATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaa                                                    >  1:3178356/1‑91 (MQ=255)

                                         aaGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaag                                                   >  1:987163/1‑91 (MQ=255)

                                         aaGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaag                                                   <  1:3162957/91‑1 (MQ=255)

                                          aGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaaga                                                  <  1:1856945/91‑1 (MQ=255)

                                           gATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGAt                                                 <  1:658057/91‑1 (MQ=255)

                                           gATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGAt                                                 <  1:1421964/91‑1 (MQ=255)

                                             taaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGc                                               <  1:555855/91‑1 (MQ=255)

                                               aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                             >  1:3228122/1‑91 (MQ=255)

                                               aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                             >  1:3227458/1‑91 (MQ=255)

                                                  aaGATTAAAAGAAGTGAAGGGTGTTGTAAATTTACCCTTCACTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                          >  1:492084/1‑91 (MQ=255)

                                                  aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                          <  1:3258096/91‑1 (MQ=255)

                                                  aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                          >  1:3810111/1‑91 (MQ=255)

                                                   aGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaa                                         >  1:563354/1‑91 (MQ=255)

                                                   aGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaa                                         >  1:563289/1‑91 (MQ=255)

                                                         aaaGAAGTGAAGGATGTTATAAATTTATCCTTCGcttcttttaatcttatttatcttcagtattttgtttatctcgttcaagtacttcttt                                   <  1:3986034‑M2/91‑58 (MQ=255)

                                                          AAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTa                                  >  1:2934588‑M1/1‑91 (MQ=255)

                                                          AAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTa                                  <  1:518143‑M1/91‑1 (MQ=255)

                                                          AAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTa                                  <  1:740146‑M1/91‑1 (MQ=255)

                                                              AGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                              >  1:379289‑M1/1‑91 (MQ=255)

                                                              AGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                              <  1:2637742‑M1/91‑1 (MQ=255)

                                                               gTGAAGGATGTTATAAATTTATCCTTCGcttcttttaatcttatttatcttcagtattttgtttatctcgttcaagtacttcttttaaata                             <  1:462259‑M2/91‑64 (MQ=255)

                                                               gTGAAGGATGTTATAAATTTATCCTTCActtcttttaatcttatttatcttcagtattttgtttatctcgttcaagtacttcttttaaata                             <  1:3942872‑M2/91‑64 (MQ=255)

                                                               GTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGCAATGAATAGTAGAAAGAAAAGATGCGTAAGAAGAATTATGTTa                             <  1:4142849‑M1/91‑1 (MQ=255)

                                                                tGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTaa                            >  1:2872336/1‑91 (MQ=255)

                                                                tGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTaa                            >  1:2872366/1‑91 (MQ=255)

                                                                 gAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAg                           >  1:1533502/1‑91 (MQ=255)

                                                                   aGGATGTTATAAATTTATCCTTCGcttcttttaatcttatttatcttcagtattttgtttatctcgttcaagtacttcttttaaatacttt                         <  1:4015182‑M2/91‑68 (MQ=255)

                                                                   aGGATGTTATAAATTTATCCTTCGcttcttttaatcttatttatcttcagtattttgtttatctcgttcaagtacttcttttaaatacttt                         <  1:3877778‑M2/91‑68 (MQ=255)

                                                                   aGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAt                         >  1:1328473/1‑91 (MQ=255)

                                                                   aGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAt                         >  1:1679569/1‑91 (MQ=255)

                                                                    ggATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATa                        <  1:2613395/91‑1 (MQ=255)

                                                                     gATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAg                       <  1:4020851/91‑1 (MQ=255)

                                                                     gATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAg                       <  1:1979777/91‑1 (MQ=255)

                                                                     gATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAg                       <  1:4021209/91‑1 (MQ=255)

                                                                     gATGTTATAAATATAACCTTCGCTTCTTTTTATTAATTTAGTAATGAATGGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAg                       <  1:1081931/91‑1 (MQ=255)

                                                                      aTGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAgg                      >  1:2767823/1‑91 (MQ=255)

                                                                       tGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAggg                     >  1:1713633/1‑91 (MQ=255)

                                                                       tGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAggg                     <  1:3819699/91‑1 (MQ=255)

                                                                       tGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAggg                     <  1:3446537/91‑1 (MQ=255)

                                                                         ttATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTc                   >  1:3743755/1‑91 (MQ=255)

                                                                             aaaTTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATc               >  1:1984052/1‑91 (MQ=255)

                                                                             aaaTTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATc               <  1:1434129/91‑1 (MQ=255)

                                                                              aaTTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCt              >  1:3804011/1‑91 (MQ=255)

                                                                                 ttATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTaga           <  1:2178173/91‑1 (MQ=255)

                                                                                  tATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTagag          <  1:1767285/91‑1 (MQ=255)

                                                                                  tATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTagag          <  1:1766907/91‑1 (MQ=255)

                                                                                      cTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagtagt      >  1:245593/1‑91 (MQ=255)

                                                                                          gCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTaaa  >  1:1616682/1‑91 (MQ=255)

GTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAA  >  USA300TCH1516_ALE/842563‑842743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.