| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 842851 = | 106 (1.080) | 5 (0.060) | 5/140 | NT | 5.2% | intergenic (+237/‑425) | uvrA/hprK | UvrABC system protein A/HPr kinase/phosphorylase |
| ? | USA300TCH1516_ALE | 891965 = | 90 (1.050) | intergenic (+383/‑356) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 | |||||
AGAAATTCTACAAACAATGCAAGTTGGCGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTTGC‑ACTCATGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/842950‑842851‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actcatgcatAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCT > USA300TCH1516_ALE/891965‑892053 AGAAATTCTACAAACAATGCAAGTTGGCGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTTGC‑A < 1:4088956/91‑1 AAATTCTACAAACAATGCAAGTTGGCGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGGATGAGTTGC‑ACT < 1:3204747/91‑1 AAATTCTACAAACAATGCAAGTTGGCGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTTGC‑ACT < 1:415679/91‑1 AAATTCTACAAACAATGCAAGTTGGCGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTTGC‑ACT < 1:3039755/91‑1 TCTACAAACAATGCAAGTTGGCGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGAATTTCTTATGCATGAGTTGC‑ACTCATG > 1:338562/1‑91 TACAAACAATGCAAGTTGGCGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTTGC‑ACTCATGCA < 1:1253864/91‑1 TACAAACAATGCAAGTTGGCGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTTGC‑ACTCATGCA < 1:1308641/91‑1 ACAAACAATGCAAGTTGGCGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTTGC‑ACTCATGCAT > 1:2233875/1‑91 aatgTGCAAGTTGGCGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTAAA‑ACTCATGCATAAGA < 1:3335355/87‑1 GCAAGTTGGCGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAG‑TGCAACTCATGCATAAGAAATAC < 1:2655708/91‑1 CGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGCA‑ACTCATGCATAAGAAATACTAATTTCTA < 1:3171391/91‑1 CATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAG‑TGCAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTA < 1:3176969/91‑1 GAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGCA‑ACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTT < 1:255015/91‑1 GAAATTAGTATTGCTTATGCATGAGTGAA‑ACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCaccc < 1:1670334/91‑5 ttttACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGAC > 1:1005495/5‑91 tttACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACAATATTGTAAGCTGACT > 1:1506427/4‑91 ACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTAC < 1:2426408/91‑1 ACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTAC > 1:1160781/1‑91 ATACGAACTACTTATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCCATCAGCT < 1:2088710/91‑1 ATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTGCCATCAGCT < 1:2088480/91‑1 ATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCT < 1:2089053/91‑1 ATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCT > 1:2024446/1‑91 ATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCT > 1:2024445/1‑91 AGAAATTCTACAAACAATGCAAGTTGGCGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTTGC‑ACTCATGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/842950‑842851‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actcatgcatAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCT > USA300TCH1516_ALE/891965‑892053 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |