BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	842851 =	106 (1.080)	5 (0.060)	5/140	NT	5.2%	intergenic (+237/‑425)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase
*	?	USA300TCH1516_ALE	891965 =	90 (1.050)	5 (0.060)	5/140	NT	5.2%	intergenic (+383/‑356)	USA300HOU_RS04385/rnmV_2	hypothetical protein/Ribonuclease M5

Only 100 of 117 total aligned reads displayed.

ATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCTTC  >  USA300TCH1516_ALE/891875‑892055

aTAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATa                                                                                            <  1:1753616/91‑1 (MQ=255)

  aGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAg                                                                                          <  1:2606803/91‑1 (MQ=255)

   gAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGa                                                                                         >  1:175917/1‑91 (MQ=255)

   gAACATTGATTTATGTCCCAGCCTGTTTTCATAAGACACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGa                                                                                         >  1:1299837/1‑91 (MQ=255)

   aatgtgcaagttggcggggccccaacataaagaaatactttttctttagaaattagtatttcttatacatgagtaaaactcatgcatAAGa                                                                                         <  1:3335355‑M2/4‑1 (MQ=255)

    aaCATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGaa                                                                                        >  1:404513/1‑91 (MQ=255)

     aCATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGaaa                                                                                       >  1:166796/1‑91 (MQ=255)

      cATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAAt                                                                                      >  1:2612625/1‑91 (MQ=255)

       aTTGATTTATGTCCCAGCCTGTTTTCATAAGCCTCAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATa                                                                                     <  1:3397365/91‑1 (MQ=255)

       aTTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATa                                                                                     <  1:46175/91‑1 (MQ=255)

       aTTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATa                                                                                     <  1:2605945/91‑1 (MQ=255)

        ttGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATAc                                                                                    >  1:1155877/1‑91 (MQ=255)

        ttGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATAc                                                                                    >  1:1781499/1‑91 (MQ=255)

        ttGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATAc                                                                                    >  1:2711047/1‑91 (MQ=255)

        ttGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATAc                                                                                    >  1:2238554/1‑91 (MQ=255)

        gcaagttggcggggccccaacataaagaaatactttttctttagaaattagtatttcttatgcatgagtgcaactcatgcatAAGAAATAc                                                                                    <  1:2655708‑M2/9‑1 (MQ=255)

         tGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACt                                                                                   <  1:1765914/91‑1 (MQ=255)

          gATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTa                                                                                  >  1:1578583/1‑91 (MQ=255)

          gATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTa                                                                                  <  1:3039140/91‑1 (MQ=255)

          gATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAACGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTa                                                                                  >  1:1459113/1‑91 (MQ=255)

           aTTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTaa                                                                                 <  1:2519015/91‑1 (MQ=255)

            tttATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAAt                                                                                >  1:2664304/1‑91 (MQ=255)

              tATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAAttt                                                                              <  1:551048/91‑1 (MQ=255)

                 gTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTa                                                                           >  1:3477770/1‑91 (MQ=255)

                  tCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTaa                                                                          <  1:2974794/91‑1 (MQ=255)

                  tCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTaa                                                                          <  1:2974925/91‑1 (MQ=255)

                    ccAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAg                                                                        >  1:975178/1‑91 (MQ=255)

                      aGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGaa                                                                      <  1:2802171/91‑1 (MQ=255)

                       gCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGaaa                                                                     >  1:996093/1‑91 (MQ=255)

                          tGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAg                                                                  <  1:2669106/91‑1 (MQ=255)

                          tGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAg                                                                  <  1:805225/91‑1 (MQ=255)

                          tGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAg                                                                  <  1:1574661/91‑1 (MQ=255)

                           gTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGt                                                                 >  1:508335/1‑91 (MQ=255)

                           gTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGt                                                                 >  1:695597/1‑91 (MQ=255)

                           gTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGt                                                                 >  1:1179033/1‑91 (MQ=255)

                            ttttCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTa                                                                >  1:1655411/1‑91 (MQ=255)

                            cataaagaaatactttttctttagaaattagtatttcttatgcatgagtgcaactcatgcatAAGAAATACTAATTTCTAAAGAAAAAGTa                                                                <  1:3176969‑M2/29‑1 (MQ=255)

                              ttCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTAtt                                                              >  1:1110055/1‑91 (MQ=255)

                              ttCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTAtt                                                              >  1:4062585/1‑91 (MQ=255)

                                cATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTc                                                            >  1:382909/1‑91 (MQ=255)

                                 aTAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCt                                                           <  1:737826/91‑1 (MQ=255)

                                 aTAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCt                                                           <  1:1517903/91‑1 (MQ=255)

                                 aTAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGCAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCt                                                           <  1:4138794/91‑1 (MQ=255)

                                    aGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTATTTTCTAAAGAAAAAGTATTTCTTTa                                                        >  1:3871933/1‑91 (MQ=255)

                                    aGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTa                                                        >  1:812467/1‑91 (MQ=38)

                                      ccACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATg                                                      <  1:1176357/91‑1 (MQ=35)

                                      ccACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATg                                                      <  1:3133320/91‑1 (MQ=34)

                                       cacaGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGt                                                     <  1:3526531/91‑1 (MQ=34)

                                         caGCTAATGTGTATTTAAAAATAGGCATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTg                                                   <  1:3861589/91‑1 (MQ=21)

                                          aGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTgg                                                  <  1:4119382/91‑1 (MQ=34)

                                          aGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTgg                                                  >  1:2813444/1‑91 (MQ=34)

                                          aGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTgg                                                  >  1:2921363/1‑91 (MQ=34)

                                           gCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTggg                                                 >  1:3560363/1‑91 (MQ=34)

                                             tAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGc                                               <  1:2611164/91‑1 (MQ=34)

                                              aaTGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGcc                                              <  1:1292762/91‑1 (MQ=34)

                                               aTGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGccc                                             >  1:283549/1‑91 (MQ=34)

                                               aTGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGccc                                             >  1:284554/1‑91 (MQ=33)

                                                 gtgtAATTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAAGACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCg                                           <  1:3790541/91‑1 (MQ=16)

                                                   gtATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGcc                                         >  1:2004977/1‑91 (MQ=37)

                                                     aTTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCaa                                       >  1:683677/1‑91 (MQ=39)

                                                     aTTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCaa                                       >  1:707920/1‑91 (MQ=39)

                                                       ttAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACt                                     <  1:2782198/91‑1 (MQ=39)

                                                       ttAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACt                                     <  1:2780974/91‑1 (MQ=39)

                                                        tAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACtt                                    <  1:2040585/91‑1 (MQ=40)

                                                        tAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACtt                                    <  1:2041465/91‑1 (MQ=40)

                                                          aaaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGc                                  >  1:890300/1‑91 (MQ=255)

                                                           aaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGca                                 <  1:1831930/91‑1 (MQ=255)

                                                           aaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGca                                 >  1:602733/1‑91 (MQ=255)

                                                           aaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGca                                 <  1:3744341/91‑1 (MQ=255)

                                                           aaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGca                                 <  1:3744402/91‑1 (MQ=255)

                                                               aGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACatt                             >  1:3667095/1‑91 (MQ=255)

                                                                ggAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACatta                            >  1:1129283/1‑91 (MQ=255)

                                                                ggAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACatta                            >  1:2474471/1‑91 (MQ=255)

                                                                ggAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACatta                            >  1:2474459/1‑91 (MQ=255)

                                                                  aaTACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACattatt                          >  1:3149784/1‑91 (MQ=255)

                                                                  aaTACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACattatt                          >  1:783422/1‑91 (MQ=255)

                                                                  aaTACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACattatt                          >  1:1648346/1‑91 (MQ=255)

                                                                    tACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGt                        >  1:301253/1‑91 (MQ=255)

                                                                     aCATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTa                       >  1:2805265/1‑91 (MQ=255)

                                                                      cATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTaa                      <  1:978378/91‑1 (MQ=255)

                                                                      cATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTaa                      >  1:1709702/1‑91 (MQ=255)

                                                                       aTGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAg                     >  1:1987835/1‑91 (MQ=255)

                                                                        tGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGc                    <  1:521277/91‑1 (MQ=255)

                                                                        ggAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGc                    <  1:1750987/90‑1 (MQ=255)

                                                                         gAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCt                   <  1:2224280/91‑1 (MQ=255)

                                                                          aGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTg                  >  1:1149376/1‑91 (MQ=255)

                                                                           gTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGTCCCGCCAACTTGCACATTATTGTAAGCTGa                 <  1:23788/91‑1 (MQ=255)

                                                                            ttttactcatgcatAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGAc                >  1:1005495‑M2/15‑91 (MQ=255)

                                                                            tAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTATTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGAc                >  1:3285381/1‑91 (MQ=255)

                                                                              aaaCTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGatgg              <  1:246464/91‑4 (MQ=255)

                                                                              aaaCTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACtt              <  1:1099362/91‑1 (MQ=255)

                                                                               aaCTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTa             <  1:779572/91‑1 (MQ=255)

                                                                                actcatgcatAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTAc            <  1:2426408‑M2/81‑1 (MQ=255)

                                                                                actcatgcatAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTAc            >  1:1160781‑M2/11‑91 (MQ=255)

                                                                                        atACGAACTACTTATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCCATCAGCt    <  1:2088710‑M2/89‑1 (MQ=255)

                                                                                        atAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTGCCATCAGCt    <  1:2088480‑M2/89‑1 (MQ=255)

                                                                                        atAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCt    >  1:2024446‑M2/3‑91 (MQ=255)

                                                                                        atAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCt    >  1:2024445‑M2/3‑91 (MQ=255)

                                                                                        atAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCt    <  1:2089053‑M2/89‑1 (MQ=255)

                                                                                          aaGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCTTc  <  1:2678412/91‑1 (MQ=255)

ATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCTTC  >  USA300TCH1516_ALE/891875‑892055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.