| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 858374 = | 91 (0.930) | 7 (0.080) | 5/146 | NT | 8.1% | intergenic (+69/‑70) | gapA1/pgk | Glyceraldehyde‑3‑phosphate dehydrogenase 1/Phosphoglycerate kinase |
| ? | USA300TCH1516_ALE | 858405 = | 75 (0.840) | intergenic (+100/‑39) | gapA1/pgk | Glyceraldehyde‑3‑phosphate dehydrogenase 1/Phosphoglycerate kinase | |||||
TAAATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/858470‑858374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCC > USA300TCH1516_ALE/858405‑858492 TAAATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCC > 1:3696565/1‑91TAAATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCC > 1:3000483/1‑91 AAATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCC < 1:3483769/91‑1 AATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCG > 1:3417264/1‑91 tctAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGC < 1:3839374/88‑1 TCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCT < 1:1126911/91‑1 TCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCT < 1:4067742/91‑1 TCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCT < 1:4067606/91‑1 TCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCT > 1:3959312/1‑91 CAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTT > 1:2246481/1‑91 CAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTT > 1:2246492/1‑91 AGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTA < 1:3389347/91‑1 AAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCCTGGCTAAAAAAATTG > 1:2625203/1‑91 AAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTG > 1:2625213/1‑91 AAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTT > 1:1185058/1‑91 ATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTC > 1:1501087/1‑91 ATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTC > 1:1501081/1‑91 AAGCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTG > 1:742680/1‑91 AGCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGA > 1:2930499/1‑91 CCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACA < 1:2107136/91‑1 TTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCC < 1:2738115/91‑1 TTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCC < 1:2554659/91‑1 TAAATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/858470‑858374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCC > USA300TCH1516_ALE/858405‑858492 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |