| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 868058 = | 90 (0.920) | 6 (0.070) | 5/146 | NT | 7.3% | coding (206/465 nt) | smpB | SsrA‑binding protein |
| ? | USA300TCH1516_ALE | 868096 = | 70 (0.780) | coding (244/465 nt) | smpB | SsrA‑binding protein | |||||
TCACGTGTTTGATCACCCAATTTAATGATTTCACGCTTGTGCAATAATAATTTTCGAGAACGAAGAGGATCGTGATTAAAACGATTCCCTTCTTCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/868154‑868058‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGCT > USA300TCH1516_ALE/868096‑868184 TCACGTGTTTGATCACCCAATTTAATGATTTCACGCTTGTGCAATAATAATTTTCGAGAACGAAGAGGATCGTGATTAAAACGATTCCCTT < 1:2572113/91‑1 CGTGTTTGATCACCCAATTTAATGATTTCACGCTTGTGCAATAATAATTTTCGAGAACGAAGAGGATCGTGATTAAAACGATTCCCTTCTT > 1:520106/1‑91 CGTGTTTGATCACCCAATTTAATGATTTCACGCTTGTGCAATAATAATTTTCGAGAACGAAGAGGATCGTGATTAAAACGATTCCCTTCTT < 1:2710753/91‑1 GTTTGATCACCCAATTTAATGATTTCACGCTTGTGCAATAATAATTTTCGAGAACGAAGAGGATCGTGATTAAAACGATTCCCTTCTTCGT < 1:2706540/91‑1 CGAGAACGAAGAGGATCGTGATTAAAACGATTCC‑‑‑CTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAA > 1:160841/1‑91 CGAAGAGGATCGTGATTAAAACGATTCCCTTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACA > 1:268495/1‑91 AAGAGGATCGTGATTAAAACGATTCCCTTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACG > 1:4033792/1‑91 AGGATCGTGATTAAAACGATTCCCTTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGA > 1:1927855/1‑91 AGGATCGTGATTAAAACGATTCCCTTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGA > 1:2552294/1‑91 GGATCGTGATTAAAACGATTCCCTTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAG > 1:3113103/1‑91 TCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTTGTTATTCGATTGTGCCGTTA < 1:227342/91‑1 TCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTA < 1:2760539/91‑1 CTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAA > 1:1496745/1‑91 CTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAA > 1:549414/1‑91 CTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAA > 1:374039/1‑91 TTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAA < 1:795487/91‑1 TCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCGAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAG < 1:614483/91‑1 CGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGC < 1:3815830/91‑1 CGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGC > 1:1394061/1‑91 GTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGCT < 1:2966823/91‑1 GTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGCT < 1:2669495/91‑1 GTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGCT < 1:1746035/91‑1 GTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGCT < 1:4108188/91‑1 GTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGCT < 1:1731841/91‑1 TCACGTGTTTGATCACCCAATTTAATGATTTCACGCTTGTGCAATAATAATTTTCGAGAACGAAGAGGATCGTGATTAAAACGATTCCCTTCTTCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/868154‑868058‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGCT > USA300TCH1516_ALE/868096‑868184 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |