BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	868058 =	90 (0.920)	6 (0.070)	5/146	NT	7.3%	coding (206/465 nt)	smpB	SsrA‑binding protein
*	?	USA300TCH1516_ALE	868096 =	70 (0.780)	6 (0.070)	5/146	NT	7.3%	coding (244/465 nt)	smpB	SsrA‑binding protein

Only 100 of 106 total aligned reads displayed.

GCGCAAGTTAAAAACGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGCT  >  USA300TCH1516_ALE/868006‑868184

gcgcAAGTTAAAAACGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGtt                                                                                          <  1:1037839/91‑1 (MQ=255)

 ttgatcacccaatttaatgatttcacgcttgtgcaataataattttcgagaACGAAG‑‑‑GGAATCGTTTTAATCACGATCCTCTTCGTTCTCg                                                                                      >  1:160841‑M1/52‑91 (MQ=255)

 cgcAAGTTAAAAACGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTtc                                                                                         <  1:1166357/91‑1 (MQ=255)

 cgcAAGTTAAAAACGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTtc                                                                                         >  1:884146/1‑91 (MQ=255)

 cgcAAGTTAAAAACGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTtc                                                                                         <  1:3600910/91‑1 (MQ=255)

    aaGTTAAAAACGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCg                                                                                      <  1:2622912/91‑1 (MQ=255)

    aaGTTAAAAACGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCg                                                                                      <  1:1902686/91‑1 (MQ=255)

    aaGTTAAAAACGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCg                                                                                      <  1:1743451/91‑1 (MQ=255)

     aGTTAAAAACGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGa                                                                                     >  1:3485493/1‑91 (MQ=255)

     aGTTAAAAACGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGa                                                                                     >  1:1804106/1‑91 (MQ=255)

       ttAAAAACGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGATTTAATCACGATCCTCTTCGTTCTCGaaa                                                                                   >  1:3320944/1‑91 (MQ=255)

        tAAAAACGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGaaaa                                                                                  <  1:2148319/91‑1 (MQ=255)

          aaaaCGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAatt                                                                                >  1:3687633/1‑91 (MQ=255)

          aaaaCGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAatt                                                                                <  1:2646167/91‑1 (MQ=255)

           aaaCGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAatta                                                                               >  1:925132/1‑91 (MQ=255)

           aaaCGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAatta                                                                               >  1:3429977/1‑91 (MQ=255)

            aaCGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAattat                                                                              >  1:2423550/1‑91 (MQ=255)

               ggTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAattattat                                                                           <  1:1843557/91‑1 (MQ=255)

                 tGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTg                                                                         >  1:1660267/1‑91 (MQ=255)

                  gAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGc                                                                        >  1:1451947/1‑91 (MQ=255)

                    aaTGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGcac                                                                      <  1:1441348/91‑1 (MQ=255)

                    aaTGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGcac                                                                      >  1:510444/1‑91 (MQ=255)

                     aTGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGcaca                                                                     <  1:374981/91‑1 (MQ=255)

                      tGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACaa                                                                    >  1:2803077/1‑91 (MQ=255)

                      tGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACaa                                                                    >  1:2803314/1‑91 (MQ=255)

                       gTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAg                                                                   <  1:2452968/91‑1 (MQ=255)

                        tATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGc                                                                  <  1:3682588/91‑1 (MQ=255)

                          tttGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGt                                                                <  1:2165419/91‑1 (MQ=255)

                          tttGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGt                                                                <  1:4039517/91‑1 (MQ=255)

                           ttGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTg                                                               >  1:3924635/1‑91 (MQ=255)

                             gAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGaa                                                             <  1:2307841/91‑1 (MQ=255)

                              aataatATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGaaa                                                            >  1:4020421/1‑91 (MQ=255)

                                 aataTGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACGAGCGTGAAATCa                                                         <  1:3197331/91‑1 (MQ=255)

                                 aataTGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCa                                                         >  1:2874040/1‑91 (MQ=255)

                                 aataTGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCa                                                         >  1:1496363/1‑91 (MQ=255)

                                 aataTGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCa                                                         >  1:2762258/1‑91 (MQ=255)

                                 aataTGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCa                                                         <  1:659375/91‑1 (MQ=255)

                                  atatGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCAt                                                        <  1:3146053/91‑1 (MQ=255)

                                   tatGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCAtt                                                       >  1:4096153/1‑91 (MQ=255)

                                     tGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTaa                                                     <  1:1922422/91‑1 (MQ=255)

                                      gCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTaaa                                                    <  1:1909190/91‑1 (MQ=255)

                                      gCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTaaa                                                    >  1:1198495/1‑91 (MQ=255)

                                       cATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAAt                                                   >  1:906036/1‑91 (MQ=255)

                                       cATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAAt                                                   <  1:2623823/91‑1 (MQ=255)

                                          ataGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTgg                                                <  1:4058594/91‑1 (MQ=255)

                                           taGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTggg                                               <  1:1500550/91‑1 (MQ=255)

                                             gCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTg                                             >  1:3079904/1‑91 (MQ=255)

                                               aCCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGAt                                           >  1:537915/1‑91 (MQ=255)

                                                ccATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATc                                          <  1:436510/91‑1 (MQ=255)

                                                ccATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATc                                          <  1:2448849/91‑1 (MQ=255)

                                                  cgagaacgaagaggatcgtgattaaaacgattcccttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCaa                                        >  1:160841‑M2/41‑91 (MQ=255)

                                                   tACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATcgaa                                       >  1:1557736/1‑88 (MQ=255)

                                                   tACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCaaa                                       >  1:300187/1‑91 (MQ=255)

                                                   tACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCaaa                                       >  1:3139420/1‑91 (MQ=255)

                                                    ACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAac                                      <  1:2706540‑M1/91‑1 (MQ=255)

                                                     cgaagaggatcgtgattaaaacgattcccttcttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAaca                                     >  1:268495‑M2/38‑91 (MQ=255)

                                                       aagaggatcgtgattaaaacgattcccttcttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACg                                   >  1:4033792‑M2/36‑91 (MQ=255)

                                                       AAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACg                                   <  1:2710753‑M1/91‑1 (MQ=255)

                                                       AAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACg                                   >  1:520106‑M1/1‑91 (MQ=255)

                                                          aggatcgtgattaaaacgattcccttcttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTga                                >  1:2552294‑M2/33‑91 (MQ=255)

                                                          aggatcgtgattaaaacgattcccttcttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTga                                >  1:1927855‑M2/33‑91 (MQ=255)

                                                          AAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGa                                <  1:2572113‑M1/91‑1 (MQ=255)

                                                           ggatcgtgattaaaacgattcccttcttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTgag                               >  1:3113103‑M2/32‑91 (MQ=255)

                                                            gggAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTgaga                              >  1:748902/1‑91 (MQ=255)

                                                            gggAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTgaga                              >  1:2204324/1‑91 (MQ=255)

                                                             ggAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGAt                             <  1:836638/91‑1 (MQ=255)

                                                             ggAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGAt                             <  1:126795/91‑1 (MQ=255)

                                                             ggAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGAt                             <  1:4058845/91‑1 (MQ=255)

                                                               aaTCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTg                           <  1:1843403/91‑1 (MQ=255)

                                                                aTCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTgg                          >  1:1318013/1‑91 (MQ=255)

                                                                 tCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGt                         >  1:3067644/1‑91 (MQ=255)

                                                                   gTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTa                       >  1:3194270/1‑91 (MQ=255)

                                                                   gTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTa                       >  1:1768675/1‑91 (MQ=255)

                                                                     tttAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTAtt                     >  1:3935212/1‑91 (MQ=255)

                                                                        aaTCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGa                  >  1:812416/1‑91 (MQ=255)

                                                                         aTCACGATCCTCTTCGTTCTCGAAAATTACTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGAt                 <  1:3334797/91‑1 (MQ=255)

                                                                          tCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGAtt                >  1:1949261/1‑91 (MQ=255)

                                                                           cACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATtg               <  1:3584438/91‑1 (MQ=255)

                                                                            aCGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATtgt              >  1:1531692/1‑91 (MQ=255)

                                                                             cGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATtgtg             >  1:3729210/1‑91 (MQ=255)

                                                                             cGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATtgtg             >  1:3462483/1‑91 (MQ=255)

                                                                             cGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATtgtg             <  1:2111037/91‑1 (MQ=255)

                                                                             cGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATtgtg             >  1:1454599/1‑91 (MQ=255)

                                                                             cGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATtgtg             <  1:3146086/91‑1 (MQ=255)

                                                                              gATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGc            >  1:3351315/1‑91 (MQ=255)

                                                                                tCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCg          >  1:2385808/1‑91 (MQ=255)

                                                                                  ctctTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGtt        >  1:2578036/1‑91 (MQ=255)

                                                                                   tcttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTTGTTATTCGATTGTGCCGTTa       <  1:227342‑M2/84‑1 (MQ=255)

                                                                                   tcttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTa       <  1:2760539‑M2/84‑1 (MQ=255)

                                                                                    cttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTaa      >  1:374039‑M2/7‑91 (MQ=255)

                                                                                    cttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTaa      >  1:549414‑M2/7‑91 (MQ=255)

                                                                                    cttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTaa      >  1:1496745‑M2/7‑91 (MQ=255)

                                                                                     ttcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTaaa     <  1:795487‑M2/86‑1 (MQ=255)

                                                                                      tcgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCGAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAg    <  1:614483‑M2/87‑1 (MQ=255)

                                                                                       cgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGc   >  1:1394061‑M2/4‑91 (MQ=255)

                                                                                       cgtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGc   <  1:3815830‑M2/88‑1 (MQ=255)

                                                                                        gtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGCt  <  1:1746035‑M2/89‑1 (MQ=255)

                                                                                        gtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGCt  <  1:2966823‑M2/89‑1 (MQ=255)

                                                                                        gtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGCt  <  1:4108188‑M2/89‑1 (MQ=255)

                                                                                        gtTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGCt  <  1:2669495‑M2/89‑1 (MQ=255)

GCGCAAGTTAAAAACGGTGAAATGTATTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCTTCGTTCTCGAAAATTATTATTGCACAAGCGTGAAATCATTAAATTGGGTGATCAAACACGTGAGATTGGTTATTCGATTGTGCCGTTAAAGCT  >  USA300TCH1516_ALE/868006‑868184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.