| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 868305 = | 81 (0.820) | 9 (0.100) | 5/148 | NT | 11.7% | coding (453/465 nt) | smpB | SsrA‑binding protein |
| ? | USA300TCH1516_ALE | 868342 = | 61 (0.670) | intergenic (+25/+1297) | smpB/USA300HOU_RS04240 | SsrA‑binding protein/hypothetical protein | |||||
TAAATCAAACAAATCATACTTTTGTAATTTACAAAAGCACATATAACTATATCAAATATAGCCCGATTAAGCAACTAAATCGCTTAATAACGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/868400‑868305‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggctATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTATTATTTCGGGGACGTTCATGGATTCGACAGG > USA300TCH1516_ALE/868342‑868431 TAAATCAAACAAATCATACTTTTGTAATTTACAAAAGCACATATAACTATATCAAATATAGCCCGATTAAGCAACTAAATCGCTTAATAAC > 1:935093/1‑91TAAATCAAACAAATCATACTTTTGTAATTTACAAAAGCACATATAACTATATCAAATATAGCCCGATTAAGCAACTAAATCGCTTAATAAC > 1:345512/1‑91 AAATCAAACAAATCATACTTTTGTAATTTACAAAAGCACATATAACTATATCAAATATAGCCCGATTAAGCAACTAAATCGCTTAATAACa > 1:80207/1‑90 AAATCAAACAAATCATACTTTTGTAATTTACAAAAGCACATATAACTATATCAAATATAGCCCGATTAAGCAACTAAATCGCTTAATAACG < 1:3024731/91‑1 AAATCAAACAAATCATACTTTTGTAATTTACAAAAGCACATATAACTATATCAAATATAGCCCGATTAAGCAACTAAATCGCTTAATAACG > 1:891507/1‑91 AATCAAACAAATCATACTTTTGTAATTTACAAAAGCACATATAACTATATCAAATATAGCCCGATTAAGCAACTAAATCGCTTAATAACGG > 1:685682/1‑91 ATAGCCCGATTAAGCAACTAAATCGCTTAATAACGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTT > 1:2155118/1‑91 CCCGATTAAGCAACTAAATCGCTTAATAACGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGAT > 1:2531838/1‑91 CCCGATTAAGCAACTAAATCGCTTAATAACGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTGGTTTGAT > 1:2079890/1‑91 CGATTAAGCAACTAAATCGCTTAATAACGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTT > 1:1226686/1‑91 ATTAAGCAACTAAATCGCTTAATAACGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTAT > 1:722631/1‑91 ATTAAGCAACTAAATCGCTTAATAACGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTAT > 1:1785344/1‑91 CAACTAAATCGCTTAAT‑‑CGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTATTATTTCGG > 1:2583364/1‑91 ACTAAATCGCTTAAT‑‑CGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTATTATTTCGGGG > 1:547732/1‑91 ACTAAATCGCTTAAT‑‑CGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTATTATTTCGGGG > 1:547743/1‑91 GGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTATTATTTCGGGGACGTTCATGGATTCGAC < 1:2777073/91‑1 GGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTATTATTTCGGGGACGTTCATGGATTCGAC > 1:3481613/1‑91 CTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTATTATTTCGGGGACGTTCATGGATTCGACAG < 1:2999701/91‑1 TATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTATTATTTCGGGGACGTTCATGGATTCGACAGG < 1:2748344/91‑1 TATATTTGATATAGGTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTATTATTTCGGGGACGTTCATGGATTCGACAGG > 1:1936445/1‑91 TAAATCAAACAAATCATACTTTTGTAATTTACAAAAGCACATATAACTATATCAAATATAGCCCGATTAAGCAACTAAATCGCTTAATAACGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/868400‑868305‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggctATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTATTATTTCGGGGACGTTCATGGATTCGACAGG > USA300TCH1516_ALE/868342‑868431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |