BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	868305 =	81 (0.820)	9 (0.100)	5/148	NT	11.7%	coding (453/465 nt)	smpB	SsrA‑binding protein
*	?	USA300TCH1516_ALE	868342 =	61 (0.670)	9 (0.100)	5/148	NT	11.7%	intergenic (+25/+1297)	smpB/USA300HOU_RS04240	SsrA‑binding protein/hypothetical protein

Only 100 of 113 total aligned reads displayed.

ACTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGT  >  USA300TCH1516_ALE/868215‑868392

cctgtcgaatccatgaacgtccccgaaataataaatcaaacaaatcatacttttgtaatttacaaaagcacatatacctatatcaaatata                                                                                         >  1:1936445‑M1/91‑91 (MQ=255)

cctgtcgaatccatgaacgtccccgaaataataaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatata                                                                                         <  1:2748344‑M1/1‑1 (MQ=255)

aCTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAA                                                                                         >  1:3450051‑M1/1‑91 (MQ=255)

 ctgtcgaatccatgaacgtccccgaaataataaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAg                                                                                        <  1:2999701‑M1/2‑1 (MQ=255)

 cTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAG                                                                                        <  1:3423643‑M1/91‑1 (MQ=255)

 cTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAG                                                                                        >  1:2175375‑M1/1‑91 (MQ=255)

  ttGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGC                                                                                       >  1:2597287‑M1/1‑91 (MQ=255)

   gtcgaatccatgaacgtccccgaaataataaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGcc                                                                                      <  1:2777073‑M1/4‑1 (MQ=255)

    ggTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCC                                                                                     >  1:3671223‑M1/1‑91 (MQ=255)

      tgtTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGt                                                                                   <  1:344797/91‑1 (MQ=255)

         tGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttat                                                                                >  1:3038393/1‑91 (MQ=255)

         tGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttat                                                                                <  1:180046/91‑1 (MQ=255)

          gCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttatt                                                                               >  1:1762270/1‑91 (MQ=255)

           cACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttatta                                                                              >  1:705246/1‑91 (MQ=255)

            aCGAGGTAAGAAAAAATATGATAAACGTCAAGTTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTaa                                                                             <  1:3535730/91‑1 (MQ=255)

            aCGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTaa                                                                             <  1:413696/91‑1 (MQ=255)

            aCGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTaa                                                                             <  1:1373291/91‑1 (MQ=255)

              gAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGc                                                                           <  1:2322372/91‑1 (MQ=255)

               aGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCg                                                                          <  1:902647/91‑1 (MQ=255)

                ggTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGa                                                                         <  1:223684/91‑1 (MQ=255)

                 ggaaGAAAAAAGATGATAAGCGCCAAGCTCTGAAAGAAAAAGCAGTCAATCGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAt                                                                        <  1:1894877/89‑1 (MQ=255)

                 gTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAt                                                                        >  1:362815/1‑91 (MQ=255)

                 gTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAt                                                                        <  1:5731/91‑1 (MQ=255)

                 gTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAt                                                                        <  1:5646/91‑1 (MQ=255)

                   aaGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAttt                                                                      >  1:3355903/1‑91 (MQ=255)

                    ccccgaaataataaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCG‑‑ATTAAGCGATTTAGt                                                                   >  1:547743‑M1/71‑91 (MQ=255)

                    ccccgaaataataaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCG‑‑ATTAAGCGATTTAGt                                                                   >  1:547732‑M1/71‑91 (MQ=255)

                    aGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTa                                                                     <  1:3680775/91‑1 (MQ=255)

                      ccgaaataataaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCG‑‑ATTAAGCGATTTAGTTg                                                                 >  1:2583364‑M1/69‑91 (MQ=255)

                      aaaaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGt                                                                   <  1:4145069/91‑1 (MQ=255)

                       aaaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGtt                                                                  >  1:2819734/1‑91 (MQ=255)

                       aaaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGtt                                                                  <  1:3532387/91‑1 (MQ=255)

                       aaaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGtt                                                                  <  1:881215/91‑1 (MQ=255)

                        aaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTg                                                                 <  1:772592/91‑1 (MQ=255)

                         aaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGc                                                                <  1:3608802/91‑1 (MQ=255)

                         aaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGc                                                                <  1:470491/91‑1 (MQ=255)

                         aaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGc                                                                >  1:1104222/1‑91 (MQ=255)

                         aaaCATGATAAACGTCAAGCGTTGAAAGAAAAAGCAGTCAAGCGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGc                                                                <  1:650948/91‑1 (MQ=255)

                          aaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttattaagcaactaaatcgct                                                               <  1:769201‑M1/91‑22 (MQ=255)

                          aaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgctta                                                               <  1:3439019‑M1/91‑22 (MQ=255)

                          aaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCt                                                               >  1:2855527/1‑91 (MQ=255)

                           atatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaa                                                              <  1:533929‑M1/91‑23 (MQ=255)

                           atatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaa                                                              <  1:533958‑M1/91‑23 (MQ=255)

                           atatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCtt                                                              >  1:309914/1‑91 (MQ=255)

                           atatGATAAACGTCAAGCTTTGAAACAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCtt                                                              <  1:3864664/91‑1 (MQ=255)

                             atGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaata                                                            <  1:1090251‑M1/91‑25 (MQ=255)

                              tGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAAt                                                           <  1:1683918/91‑1 (MQ=255)

                              tGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAAt                                                           >  1:1099634/1‑91 (MQ=255)

                              tGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAAt                                                           >  1:1099456/1‑91 (MQ=255)

                              ataaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCGTTATTAAGCGATTTAGTTGCTTAAt                                                           >  1:722631‑M1/61‑91 (MQ=255)

                              ataaatcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCGTTATTAAGCGATTTAGTTGCTTAAt                                                           >  1:1785344‑M1/61‑91 (MQ=255)

                               gATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATc                                                          <  1:88791‑M2/91‑2 (MQ=255)

                                  atcaaacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCGTTATTAAGCGATTTAGTTGCTTAATCggg                                                       >  1:2531838‑M1/57‑91 (MQ=255)

                                  aaaCGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaataacggg                                                       <  1:1063166‑M1/91‑30 (MQ=255)

                                  aaaCGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcggg                                                       >  1:3039554‑M2/1‑87 (MQ=255)

                                  aaaCGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcggg                                                       >  1:2133031‑M2/1‑87 (MQ=255)

                                  aaaCGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcggg                                                       >  1:2133269‑M2/1‑87 (MQ=255)

                                  aaaCGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcggg                                                       >  1:2133159‑M2/1‑87 (MQ=255)

                                      aacaaatcatacttttgtaatttacaaaagcacatataactatatcaaatatAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCtat                                                   >  1:2155118‑M1/53‑91 (MQ=255)

                                       tCAAGCTTTGAAAGAAAAAGCAGTCGAACGAGATGTTGCGCGCGATATGAAAGGCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCtata                                                  <  1:3857698/91‑1 (MQ=255)

                                        cAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTatat                                                 <  1:1278972/91‑1 (MQ=255)

                                         aaGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATCtt                                                >  1:814782/1‑91 (MQ=255)

                                          aGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATAttt                                               <  1:708234/91‑1 (MQ=255)

                                           gCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTg                                              <  1:3609799/91‑1 (MQ=255)

                                            cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                             <  1:2821792/91‑1 (MQ=255)

                                            cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                             <  1:2975062/91‑1 (MQ=255)

                                            cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                             <  1:484066/91‑1 (MQ=255)

                                            cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                             <  1:3819785/91‑1 (MQ=255)

                                            cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                             <  1:890556/91‑1 (MQ=255)

                                            cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                             <  1:2272835/91‑1 (MQ=255)

                                                    gaaaAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTta                                     >  1:1030413/1‑91 (MQ=255)

                                                     aaaaaGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTtat                                    <  1:1507481/91‑1 (MQ=255)

                                                      aaaaGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATCGTtata                                   <  1:3221901/91‑1 (MQ=255)

                                                      aaaaGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTtata                                   <  1:863289/91‑1 (MQ=255)

                                                           cAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGc                              >  1:1750120/1‑91 (MQ=255)

                                                           cAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGc                              >  1:201597/1‑91 (MQ=255)

                                                            aGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCt                             <  1:144072/91‑1 (MQ=255)

                                                            aGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCt                             >  1:2557696/1‑91 (MQ=255)

                                                            aGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCt                             <  1:144056/91‑1 (MQ=255)

                                                            aGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCt                             <  1:2851926/91‑1 (MQ=255)

                                                             gTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCtt                            >  1:1226359/1‑91 (MQ=255)

                                                                 aaCGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGt                        >  1:966826/1‑91 (MQ=255)

                                                                 aaCGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGt                        >  1:3354212/1‑91 (MQ=255)

                                                                 aaCGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGt                        >  1:3354516/1‑91 (MQ=255)

                                                                   cGAGATGTTGCGCGCGATATGAGAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTaa                      <  1:1814010/91‑1 (MQ=255)

                                                                   cGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTaa                      >  1:640318/1‑91 (MQ=255)

                                                                     agaTGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAAt                    >  1:4094969/1‑91 (MQ=255)

                                                                       aTGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTa                  <  1:3970195/91‑1 (MQ=255)

                                                                       aTGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTa                  >  1:304482/1‑91 (MQ=255)

                                                                         gTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTACTTTTGTAATTTACa                <  1:2830205/91‑1 (MQ=255)

                                                                          ttGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACaa               >  1:112299/1‑91 (MQ=255)

                                                                           tGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACaaa              <  1:2917441/91‑1 (MQ=255)

                                                                            gcgcgcGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACaaaa             <  1:1979475/91‑1 (MQ=255)

                                                                               cgcgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTa          <  1:2559127/91‑1 (MQ=255)

                                                                               cgcgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTa          <  1:3804800/91‑1 (MQ=255)

                                                                               cgcgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTa          <  1:1869323/91‑1 (MQ=255)

                                                                                   atatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTATAAAAGTATGAt      <  1:316404/91‑1 (MQ=255)

                                                                                   atatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTCTGTAAATTACAAAAGTATGAt      >  1:908205/1‑91 (MQ=255)

                                                                                   atatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATCTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAt      >  1:2670035/1‑91 (MQ=255)

                                                                                    tatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAtt     <  1:223021/91‑1 (MQ=255)

ACTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGT  >  USA300TCH1516_ALE/868215‑868392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.