| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 869579 = | 125 (1.270) | 10 (0.120) | 7/140 | NT | 9.4% | intergenic (+1262/+60) | smpB/USA300HOU_RS04240 | SsrA‑binding protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 869621 = | 84 (0.980) | intergenic (+1304/+18) | smpB/USA300HOU_RS04240 | SsrA‑binding protein/hypothetical protein | |||||
AGTTATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/869676‑869579‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCATTAAC > USA300TCH1516_ALE/869621‑869710 AGTTATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTC > 1:3937635/1‑91 GTTATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCA > 1:1206134/1‑91 GTTATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCA > 1:1740576/1‑91 GTTATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCA > 1:1740623/1‑91 GTTATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCA < 1:2217457/91‑1 GTTATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCA < 1:3161646/91‑1 GTTATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTCTTCA > 1:3462678/1‑91 TTATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCAT < 1:3715016/91‑1 TTATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCAT < 1:3244317/91‑1 TTATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCAT < 1:3244248/91‑1 ATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAG < 1:933748/91‑1 ATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAG > 1:3371299/1‑91 TATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGC < 1:2163538/91‑1 TATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGC < 1:1011666/91‑1 TATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGC < 1:847645/91‑1 TATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGC < 1:812707/91‑1 TATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGC < 1:1763463/91‑1 ATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGCT < 1:586558/91‑1 ATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGCT < 1:2633104/91‑1 TGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGCTA < 1:3152041/91‑1 TGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGCTA > 1:1218850/1‑91 TGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGCTA < 1:3922468/91‑1 TAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGCTAATCTTAGTATGTTTATTTTTATT > 1:3107914/1‑91 AACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATT > 1:2745344/1‑91 AGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACAT > 1:3055773/1‑91 CTATGAAGGAATCTATGACGATAGATTTTTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATAT > 1:1810981/1‑91 TGAAGGAATCTATGACGATAGATTTTTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAAC > 1:2972785/1‑91 TGAAGGAATCTATGACGATAGATTTTTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAAC > 1:2972784/1‑91 AAGGAATCTATGACGATAGATTTTTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTC > 1:3705600/1‑91 ATCTATGACGATAGATTTTTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTAT > 1:3158113/1‑91 ATCTATGACGATAGATTTTTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTAT > 1:3158053/1‑91 ATCTATGACGATAGATTTTTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTAT > 1:3579706/1‑91 TTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATAT < 1:2935299/91‑1 TTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATAT < 1:603930/91‑1 TTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATAT < 1:2935207/91‑1 TTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATAT < 1:2934444/91‑1 TCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATA > 1:441367/1‑91 CATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATAT > 1:1546613/1‑91 CATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATAT > 1:2272078/1‑91 CATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATAT > 1:2546012/1‑91 TAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCA > 1:81475/1‑91 AGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCAT < 1:3169929/91‑1 GCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCATT < 1:3610927/91‑1 CTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCATTA < 1:3640114/91‑1 AATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCATTAAC < 1:3134611/91‑1 AGTTATATGTTGAGTTGATAAATAGCATCCTAAAATAAAAATAAACATACTAAGATTAGCTATGAAGGAATCTATGACGATAGATTTTTTCATAGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/869676‑869579‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCATTAAC > USA300TCH1516_ALE/869621‑869710 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |