BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	869579 =	125 (1.270)	10 (0.120)	7/140	NT	9.4%	intergenic (+1262/+60)	smpB/USA300HOU_RS04240	SsrA‑binding protein/hypothetical protein
*	?	USA300TCH1516_ALE	869621 =	84 (0.980)	10 (0.120)	7/140	NT	9.4%	intergenic (+1304/+18)	smpB/USA300HOU_RS04240	SsrA‑binding protein/hypothetical protein

Only 100 of 144 total aligned reads displayed.

AAAATCCAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCATTAAC  >  USA300TCH1516_ALE/869531‑869710

aaaaTCCAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTaa                                                                                           >  1:89951/1‑91 (MQ=255)

 aaaTCCAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAAt                                                                                          >  1:1923037/1‑91 (MQ=255)

 aaaTCCAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAAt                                                                                          >  1:1242292/1‑91 (MQ=255)

   aTCCAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCt                                                                                        >  1:1754052/1‑91 (MQ=255)

       aaGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGt                                                                                    >  1:1549000/1‑91 (MQ=255)

        agagTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTa                                                                                   >  1:3507744/1‑91 (MQ=255)

        agagTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTa                                                                                   >  1:1869895/1‑91 (MQ=255)

         gagTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTAt                                                                                  >  1:2753975/1‑91 (MQ=255)

          agTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATg                                                                                 <  1:157487/91‑1 (MQ=255)

            tCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtt                                                                               >  1:3941635/1‑91 (MQ=255)

            tCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtt                                                                               >  1:3941756/1‑91 (MQ=255)

              aGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGttta                                                                             <  1:2497869/91‑1 (MQ=255)

              aGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGttta                                                                             <  1:2497808/91‑1 (MQ=255)

               gAACAGACTACTCCTCTTTATAACTATAAAAGATAGCTATGAAAGAATCTATCGTCAGAGATTCCTTCATAGCTAATCTTAGTATGtttat                                                                            <  1:3314653/91‑1 (MQ=17)

               gAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttat                                                                            >  1:2779714/1‑91 (MQ=255)

               gAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttat                                                                            >  1:2779525/1‑91 (MQ=255)

                aaCAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttatt                                                                           >  1:1934065/1‑91 (MQ=255)

                aaCAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttatt                                                                           <  1:4040636/91‑1 (MQ=255)

                aaCAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttatt                                                                           >  1:1662969/1‑91 (MQ=255)

                 aCAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttattt                                                                          <  1:2537090/91‑1 (MQ=255)

                  cAGTCTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttatttt                                                                         <  1:3217651/91‑1 (MQ=255)

                    gACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttattttta                                                                       <  1:523725/91‑1 (MQ=255)

                     actactCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttatttttat                                                                      <  1:2149130/91‑1 (MQ=255)

                      taaaataaaaataaacatactaagattagctatgaaggaatctatgacgatagattttttcatagctaATCTTAGTATGtttatttttatt                                                                     >  1:3107914‑M2/69‑91 (MQ=255)

                      ctactCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttatttttatt                                                                     <  1:788436/91‑1 (MQ=255)

                      ctactCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttatttttatt                                                                     <  1:788221/91‑1 (MQ=255)

                           cctcTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAgg                                                                >  1:2364827/1‑91 (MQ=255)

                             tctTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGAt                                                              <  1:430388/91‑1 (MQ=255)

                              ctTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATg                                                             <  1:2909781/91‑1 (MQ=255)

                              ctTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATg                                                             <  1:2909712/91‑1 (MQ=255)

                              ctTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATg                                                             <  1:3758408/91‑1 (MQ=255)

                              ctTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATg                                                             >  1:4000747/1‑91 (MQ=255)

                              ctTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATg                                                             <  1:4047345/91‑1 (MQ=255)

                                ttATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCt                                                           <  1:50752/91‑1 (MQ=255)

                                ttATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCt                                                           <  1:1902499/91‑1 (MQ=255)

                                ttATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCt                                                           >  1:2799240/1‑91 (MQ=255)

                                  ataACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTAt                                                         >  1:3285519/1‑91 (MQ=255)

                                  ataACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTAt                                                         >  1:2057311/1‑91 (MQ=255)

                                   taACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTAtt                                                        >  1:3262956/1‑91 (MQ=255)

                                   aacatactaagattagctatgaaggaatctatgacgatagattttttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTAtt                                                        >  1:2745344‑M2/56‑91 (MQ=255)

                                     aCTATAAAAAATAGCTATGAAAAAGTCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTa                                                      <  1:475628/91‑1 (MQ=255)

                                     aCTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTa                                                      <  1:3193939/91‑1 (MQ=255)

                                     aCTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTa                                                      >  1:1916999/1‑91 (MQ=255)

                                     aCTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTa                                                      <  1:2995289/91‑1 (MQ=255)

                                     aCTATAAAAAATAGCTATGAAAAAATCTATCGTCATACATTCCTTCATAGCCAATCTTAGTATGTCTATTTTTGTTTTAGGCTGCAATTTa                                                      >  1:3855094/1‑91 (MQ=17)

                                      cTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAt                                                     <  1:1496945/91‑1 (MQ=255)

                                      cTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAt                                                     >  1:2022743/1‑91 (MQ=255)

                                       tataAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtc                                                    <  1:1370031/91‑1 (MQ=255)

                                        ataAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtca                                                   >  1:1172294/1‑91 (MQ=255)

                                        ataAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtca                                                   >  1:2721046/1‑91 (MQ=255)

                                         taAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtcaa                                                  >  1:573785/1‑91 (MQ=255)

                                          aaaaaaTAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtcaac                                                 >  1:2373490/1‑91 (MQ=255)

                                           aaaaaTAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtcaact                                                >  1:2445338/1‑91 (MQ=255)

                                             aaaTAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtcaactca                                              >  1:180395/1‑91 (MQ=255)

                                              aaTAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtcaactcaa                                             <  1:1259472/91‑1 (MQ=255)

                                                TAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACa                                           <  1:3152041‑M1/91‑1 (MQ=255)

                                                TAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACa                                           <  1:3922468‑M1/91‑1 (MQ=255)

                                                 agctatgaaggaatctatgacgatagattttttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACat                                          >  1:3055773‑M2/42‑91 (MQ=255)

                                                 AGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACat                                          <  1:586558‑M1/91‑1 (MQ=255)

                                                 AGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACat                                          <  1:2633104‑M1/91‑1 (MQ=255)

                                                  GCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACata                                         <  1:2163538‑M1/91‑1 (MQ=255)

                                                  GCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACata                                         <  1:812707‑M1/91‑1 (MQ=255)

                                                  GCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACata                                         <  1:847645‑M1/91‑1 (MQ=255)

                                                  GCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACata                                         <  1:1011666‑M1/91‑1 (MQ=255)

                                                   ctatgaaggaatctatgacgatagattttttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACatat                                        >  1:1810981‑M2/40‑91 (MQ=255)

                                                   CTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACatat                                        >  1:3371299‑M1/1‑91 (MQ=255)

                                                   CTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACatat                                        <  1:933748‑M1/91‑1 (MQ=255)

                                                     ATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATaa                                      <  1:3244317‑M1/91‑1 (MQ=255)

                                                     ATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATaa                                      <  1:3715016‑M1/91‑1 (MQ=255)

                                                      tgaaggaatctatgacgatagattttttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAAc                                     >  1:2972785‑M2/37‑91 (MQ=255)

                                                      tgaaggaatctatgacgatagattttttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAAc                                     >  1:2972784‑M2/37‑91 (MQ=255)

                                                      TGAAGAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAAc                                     >  1:3462678‑M1/1‑91 (MQ=255)

                                                      TGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAAc                                     >  1:1206134‑M1/1‑91 (MQ=255)

                                                      TGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAAc                                     >  1:1740623‑M1/1‑91 (MQ=255)

                                                      TGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAAc                                     <  1:3161646‑M1/91‑1 (MQ=255)

                                                        aaggaatctatgacgatagattttttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTc                                   >  1:3705600‑M2/35‑91 (MQ=255)

                                                             atctatgacgatagattttttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTAt                              >  1:3579706‑M2/30‑91 (MQ=255)

                                                             atctatgacgatagattttttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTAt                              >  1:3158113‑M2/30‑91 (MQ=255)

                                                                tATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTAtttt                           <  1:75861/91‑1 (MQ=255)

                                                                 aTCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTAttttt                          <  1:565399/91‑1 (MQ=255)

                                                                   cGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTtat                        <  1:3436815/91‑1 (MQ=255)

                                                                    gTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTtata                       <  1:953186/91‑1 (MQ=255)

                                                                     tCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATaa                      <  1:4111377/91‑1 (MQ=255)

                                                                       aTAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAAcc                    >  1:4153540/1‑91 (MQ=255)

                                                                        tAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCt                   <  1:3410743/91‑1 (MQ=255)

                                                                          gATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTc                 <  1:2391255/91‑1 (MQ=255)

                                                                           aTTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGAGGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCt                <  1:3295866/91‑1 (MQ=255)

                                                                             tCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTaa              >  1:2247944/1‑91 (MQ=255)

                                                                             tCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTaa              <  1:256662/91‑1 (MQ=255)

                                                                              ccTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAat             >  1:2414555/1‑91 (MQ=255)

                                                                              ccTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAat             >  1:392331/1‑91 (MQ=255)

                                                                                ttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAatat           <  1:2935207‑M2/81‑1 (MQ=255)

                                                                                ttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAatat           <  1:603930‑M2/81‑1 (MQ=255)

                                                                                ttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAatat           <  1:2934444‑M2/81‑1 (MQ=255)

                                                                                 tcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAatata          >  1:441367‑M2/10‑91 (MQ=255)

                                                                                  catagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAatatat         >  1:2546012‑M2/9‑91 (MQ=255)

                                                                                  catagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAatatat         >  1:2272078‑M2/9‑91 (MQ=255)

                                                                                    tagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCa       >  1:81475‑M2/7‑91 (MQ=255)

                                                                                      gctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCAtt     <  1:3610927‑M2/87‑1 (MQ=255)

                                                                                         aATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCATTAAc  <  1:3134611‑M2/90‑1 (MQ=255)

AAAATCCAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCATTAAC  >  USA300TCH1516_ALE/869531‑869710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.