| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 878353 | 74 (0.750) | 9 (0.100) | 5/140 | NT | 12.3% | coding (359/1023 nt) | ssp | Extracellular matrix protein‑binding protein emp |
| ? | USA300TCH1516_ALE | = 878384 | 63 (0.730) | coding (390/1023 nt) | ssp | Extracellular matrix protein‑binding protein emp | |||||
GTAAAATTGTAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/878254‑878353‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagcaacaaaATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGTTTCCTAA < USA300TCH1516_ALE/878384‑878295 GTAAAATTGTAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGT < 1:3243532/91‑1GTAAAATTGTAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGT < 1:2871342/91‑1 AAAATTGTAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAG > 1:3471172/1‑91 AAAATTGTAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAG > 1:1740282/1‑91 AAATTGTAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGC > 1:1201852/1‑91 AAATTGTAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGC > 1:2871256/1‑91 ATTGTAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAA < 1:3115658/91‑1 TGTAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACA < 1:3190450/91‑1 GTAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAA > 1:580657/1‑91 GTAGATAAAAACCTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAA > 1:3205688/1‑91 TAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAA < 1:3989734/91‑1 TAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAA < 1:3989803/91‑1 TAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAA < 1:2245171/91‑1 CAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAAATGCTTATCAACTTGTTGTGAAGCTGG < 1:4023693/91‑1 TTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGT < 1:1304127/91‑1 AGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTT < 1:1169978/91‑1 AGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTT < 1:3159354/91‑1 ACATTGTGCCAGAGTACAAATAAATCAATAATGGCGTGAATGTATCAACAAAATGCTTATCAACTTGTTGTGAAGCTGCATTGTTTGTTGC < 1:4104115/91‑1 ACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGC < 1:4104277/91‑1 ACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGC < 1:2062403/91‑1 ACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGC < 1:389982/91‑1 ATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTA < 1:4068239/91‑1 TAGCAACAATATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTAGCACAAT > 1:2079653/1‑91 TAGCAACAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTAGTGATTTCTTTGTACTCTGGCACAAT > 1:3866122/1‑91 AGCGACAAAGTGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATG < 1:3733824/91‑1 AGCAACAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATG < 1:1709840/91‑1 GCAACAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGT < 1:1904554/91‑1 CAACAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGTT < 1:2017011/91‑1 CAACAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGTT > 1:3323066/1‑91 CAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGTTTCC > 1:135618/1‑91 CAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGTTTCC < 1:3975627/91‑1 CAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGTTTCC < 1:37736/91‑1 CAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGTTTCC < 1:1482833/91‑1 CAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGTTTCC < 1:1484898/91‑1 CAAAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGTTTCC < 1:2883482/91‑1 AAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCTCGCGATTATTGATTTCTTTGTACTCTGGCACAATGTTTCCTA < 1:1874789/91‑1 AAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGTTTCCTA < 1:1872588/91‑1 AAATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGTTTCCTA < 1:1872529/91‑1 AATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGTTTCCTAA > 1:2929184/1‑91 GTAAAATTGTAGATAAAAACTTTGTCGTACCAGAATCAAAGTTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/878254‑878353‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagcaacaaaATGCTTATCAACTTGTTGTGAAGCTGGATTGTTTGTTGCTACATTCACGCGATTATTGATTTCTTTGTACTCTGGCACAATGTTTCCTAA < USA300TCH1516_ALE/878384‑878295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |