BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 878353	74 (0.750)	9 (0.100)	5/140	NT	12.3%	coding (359/1023 nt)	ssp	Extracellular matrix protein‑binding protein emp
*	?	USA300TCH1516_ALE	= 878384	63 (0.730)	9 (0.100)	5/140	NT	12.3%	coding (390/1023 nt)	ssp	Extracellular matrix protein‑binding protein emp

Only 100 of 103 total aligned reads displayed.

TTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAACCCACTACAAGAAA  >  USA300TCH1516_ALE/878295‑878474

ttAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATt                                                                                           >  1:2929184‑M2/1‑90 (MQ=255)

 tAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtt                                                                                          <  1:1872588‑M2/91‑3 (MQ=255)

 tAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtt                                                                                          <  1:1872529‑M2/91‑3 (MQ=255)

 tAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGAGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtt                                                                                          <  1:1874789‑M2/91‑3 (MQ=255)

   ggAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttg                                                                                        <  1:1482833‑M2/91‑5 (MQ=255)

   ggAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttg                                                                                        <  1:2883482‑M2/91‑5 (MQ=255)

   ggAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttg                                                                                        <  1:1484898‑M2/91‑5 (MQ=255)

   ggAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttg                                                                                        >  1:135618‑M2/1‑87 (MQ=255)

   ggAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttg                                                                                        <  1:37736‑M2/91‑5 (MQ=255)

   ggAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttg                                                                                        <  1:3975627‑M2/91‑5 (MQ=255)

      aaCATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttgttg                                                                                     >  1:3323066‑M2/1‑84 (MQ=255)

      aaCATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttgttg                                                                                     <  1:2017011‑M2/91‑8 (MQ=255)

       aCATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttgttgc                                                                                    <  1:1904554‑M2/91‑9 (MQ=255)

        cATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttgttgct                                                                                   <  1:1709840‑M2/91‑10 (MQ=255)

        cATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCACtttgtcgct                                                                                   <  1:3733824‑M2/91‑10 (MQ=255)

         aTTGTGCTAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATattgttgcta                                                                                  >  1:2079653‑M2/1‑81 (MQ=255)

         aTTGTGCCAGAGTACAAAGAAATCACTAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttgttgcta                                                                                  >  1:3866122‑M2/1‑81 (MQ=255)

          ttGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTaa                                                                                 <  1:3075972/91‑1 (MQ=255)

            gtgCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAg                                                                               <  1:524976/91‑1 (MQ=255)

             tgCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAgg                                                                              <  1:2423413/91‑1 (MQ=255)

              gCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGc                                                                             >  1:2329203/1‑91 (MQ=255)

              gCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGc                                                                             >  1:1659343/1‑91 (MQ=255)

                cAGAGTACAAAGAAATCAAGAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGccc                                                                           <  1:1528464/91‑1 (MQ=255)

                 agagTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCa                                                                          <  1:2587165/91‑1 (MQ=255)

                 agagTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCa                                                                          <  1:2586583/91‑1 (MQ=255)

                 agagTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCa                                                                          >  1:1346533/1‑91 (MQ=255)

                     tACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAg                                                                      <  1:1135857/91‑1 (MQ=255)

                        aaaGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTaa                                                                   >  1:952478/1‑91 (MQ=255)

                        aaaGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCACTTTGTTGCTAAAGGCCCAGAAGTaa                                                                   >  1:3871368/1‑91 (MQ=255)

                           gAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATa                                                                <  1:2256445/91‑1 (MQ=255)

                           gAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATa                                                                <  1:3355179/91‑1 (MQ=255)

                            aaaTCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAg                                                               >  1:234352/1‑91 (MQ=255)

                               tCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGAtt                                                            >  1:3151217/1‑91 (MQ=255)

                                 aataatCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATtta                                                          <  1:262897/91‑1 (MQ=255)

                                 aataatCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATtta                                                          >  1:2652637/1‑91 (MQ=255)

                                 aataatCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATtta                                                          >  1:3019864/1‑91 (MQ=255)

                                 aataatCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATtta                                                          >  1:1343131/1‑91 (MQ=255)

                                  ataatCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATttat                                                         <  1:1049050/91‑1 (MQ=255)

                                   taatCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATttatt                                                        >  1:3610175/1‑91 (MQ=255)

                                   taatCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATttatt                                                        >  1:261247/1‑91 (MQ=255)

                                      tCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACg                                                     <  1:1548066/91‑1 (MQ=255)

                                      tCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACg                                                     >  1:430887/1‑91 (MQ=255)

                                       cgcgTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGc                                                    <  1:1770679/91‑1 (MQ=255)

                                        gcgTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCa                                                   >  1:135040/1‑91 (MQ=255)

                                           tGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCaaaa                                                <  1:3838458/91‑1 (MQ=255)

                                           tGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCaaaa                                                <  1:3838690/91‑1 (MQ=255)

                                           tGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCaaaa                                                <  1:2585955/91‑1 (MQ=255)

                                               tGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACaaa                                            <  1:3903780/91‑1 (MQ=255)

                                               tGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACaaa                                            <  1:3318853/91‑1 (MQ=255)

                                               tGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATGACGCAAAACaaa                                            <  1:3178123/91‑1 (MQ=255)

                                                 tAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttgttgctacattcacgcgattattgatttctttgtactctggcacaat                                          <  1:4068239‑M2/91‑51 (MQ=255)

                                                   gCAACAAACAATGCAGCTTCACAACAAGTTGATAAGCATtttgttgatacattcacgccattattgatttatttgtactctggcacaatgt                                        <  1:4104115‑M2/91‑53 (MQ=255)

                                                   gCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttgttgctacattcacgcgattattgatttctttgtactctggcacaatgt                                        <  1:389982‑M2/91‑53 (MQ=255)

                                                   gCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttgttgctacattcacgcgattattgatttctttgtactctggcacaatgt                                        <  1:4104277‑M2/91‑53 (MQ=255)

                                                   gCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATtttgttgctacattcacgcgattattgatttctttgtactctggcacaatgt                                        <  1:2062403‑M2/91‑53 (MQ=255)

                                                   gCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTaa                                        >  1:403579/1‑91 (MQ=255)

                                                   gCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTaa                                        <  1:3468944/91‑1 (MQ=255)

                                                     aacaaacaATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAac                                      >  1:2159196/1‑91 (MQ=255)

                                                     aacaaacaATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAac                                      >  1:2325934/1‑91 (MQ=255)

                                                     aacaaacaATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAac                                      >  1:1613353/1‑91 (MQ=255)

                                                      acaaacaaTCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAacc                                     <  1:503830/91‑1 (MQ=255)

                                                      acaaacaaTCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAacc                                     >  1:3925440/1‑91 (MQ=255)

                                                      acaaacaaTCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAacc                                     >  1:3925456/1‑91 (MQ=255)

                                                        aaacaaTCCAGCTTCACAACAAGTTGATAAGCATtttgttgctacattcacgcgattattgatttctttgtactctggcacaatgtttcct                                   <  1:3159354‑M2/91‑58 (MQ=255)

                                                        aaacaaTCCAGCTTCACAACAAGTTGATAAGCATtttgttgctacattcacgcgattattgatttctttgtactctggcacaatgtttcct                                   <  1:1169978‑M2/91‑58 (MQ=255)

                                                         aacaaTCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAaccacc                                  <  1:2604127/91‑1 (MQ=255)

                                                         aacaaGCCAGCTGCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAaccacc                                  <  1:2468016/91‑1 (MQ=255)

                                                          acaaTCCAGCTTCACAACAAGTTGATAAGCATtttgttgctacattcacgcgattattgatttctttgtactctggcacaatgtttcctaa                                 <  1:1304127‑M2/91‑60 (MQ=255)

                                                          acaaTCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAAccacca                                 >  1:1397731/1‑91 (MQ=255)

                                                          acaaTCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAAccacca                                 >  1:2295538/1‑91 (MQ=255)

                                                          acaaTCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAAccacca                                 >  1:1397380/1‑91 (MQ=255)

                                                           caaTCCAGCTTCACAACAAGTTGATGAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACcaccac                                <  1:3878112/91‑1 (MQ=255)

                                                           caaTCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACcaccac                                >  1:2215777/1‑91 (MQ=255)

                                                           caaTCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACcaccac                                <  1:3597719/91‑1 (MQ=255)

                                                            aaTCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACt                               <  1:2947469/91‑1 (MQ=255)

                                                             aTCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACTACtt                              >  1:3455046/1‑91 (MQ=255)

                                                               ccAGCTTCACAACAAGTTGATAAGCATtttgttgctacattcacgcgattattgatttctttgtactctggcacaatgtttcctaactttg                            <  1:4023693‑M2/91‑65 (MQ=255)

                                                               ccAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACTACCACTTCa                            >  1:3968694/1‑91 (MQ=255)

                                                               ccAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCa                            >  1:2238245/1‑91 (MQ=255)

                                                               ccAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCa                            >  1:2238341/1‑91 (MQ=255)

                                                               ccAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCa                            >  1:2720525/1‑91 (MQ=255)

                                                                cAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCATAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCAt                           <  1:3302384/91‑1 (MQ=255)

                                                                  gCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATta                         <  1:2789392/91‑1 (MQ=255)

                                                                   cTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATtac                        <  1:3932742/91‑1 (MQ=255)

                                                                       acaacaAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACg                    >  1:4010095/1‑91 (MQ=255)

                                                                         aacaaGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCa                  <  1:822771/91‑1 (MQ=255)

                                                                            aaGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAAc               <  1:2127401/91‑1 (MQ=255)

                                                                            aaGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAAc               <  1:2663266/91‑1 (MQ=255)

                                                                                tGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAACCCAc           >  1:2258565/1‑91 (MQ=255)

                                                                                 gATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAACCCACt          >  1:81031/1‑91 (MQ=255)

                                                                                  aTAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAAGCACCACTTCATTACTACGCAAACCCACTa         >  1:3318884/1‑91 (MQ=255)

                                                                                    aaGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAACCCACTACa       <  1:2885556/91‑1 (MQ=255)

                                                                                     aGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAACCCACTACaa      <  1:2769438/91‑1 (MQ=255)

                                                                                      gCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAACCCACTACAAg     <  1:2343117/91‑1 (MQ=255)

                                                                                       cATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAACCCACTACAAGa    <  1:3750735/91‑1 (MQ=255)

                                                                                       cATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAACCCACTACAAGa    >  1:306240/1‑91 (MQ=255)

                                                                                       cATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAACCCACTACAAGa    <  1:3660238/91‑1 (MQ=255)

                                                                                       cATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAACCCACTACAAGa    <  1:3660741/91‑1 (MQ=255)

                                                                                         ttttGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAACCCACTACAAGaaa  <  1:1975450/91‑1 (MQ=255)

                                                                                         ttttGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAACCCACTACAAGaaa  <  1:2738244/91‑1 (MQ=255)

TTAGGAAACATTGTGCCAGAGTACAAAGAAATCAATAATCGCGTGAATGTAGCAACAAACAATCCAGCTTCACAACAAGTTGATAAGCATTTTGTTGCTAAAGGCCCAGAAGTAAATAGATTTATTACGCAAAACAAAGTAAACCACCACTTCATTACTACGCAAACCCACTACAAGAAA  >  USA300TCH1516_ALE/878295‑878474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.