| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 900173 = | 93 (0.950) | 14 (0.160) | 7/140 | NT | 18.0% | coding (174/273 nt) | USA300HOU_RS04450 | hypothetical protein |
| ? | USA300TCH1516_ALE | 900207 = | 46 (0.530) | coding (208/273 nt) | USA300HOU_RS04450 | hypothetical protein | |||||
CTACATCCATTTTTTATGACGCGCCTTCATGTACTCCTCGAATCGCGGAATACTGATAACAATCATTGTTGATGATAACGAGTAATATAAATCATCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/900272‑900173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGTAC > USA300TCH1516_ALE/900207‑900295 CTACATCCATTTTTTATGACGCGCCTTCATGTACTCCTCGAATCGCGGAATACTGATAACAATCATTGTTGATGATAACGAGTAATATAAA > 1:969934/1‑91 TCCATTTTTTATGACGCGCCTTCATGTACTCCTCGAATCGCGGAATACTGATAACAATCATTGTTGATGATAACGAGTAATATAAATCATC < 1:1592650/91‑1 TCCATTTTTTATGACGCGCCTTCATGTACTCCTCGAATCGCGGAATACTGATAACAATCATTGTTGATGATAACGAGTAATATAAATCATC > 1:3611696/1‑91 TCCATTTTTTATGACGCGCCTTCATGTACTCCTCGAATCGCGGAATACTGATAACAATCATTGTTGATGATAACGAGTAATATAAATCATC < 1:3000788/91‑1 TCCATTTTTTATGACGCGCCTTCATGTACTCCTCGAATCGCGGAATACTGATAACAATCATTGTTGATGATAACGAGTAATATAAATCATC < 1:3000300/91‑1 TCCATTTTTTATGACGCGCCTTCATGTACTCCTCGAATCGCGGAATACTGATAACAATCATTGTTGATGATAACGAGTAATATAAATCATC > 1:2770018/1‑91 TCCATTTTTTATGACGCGCCTTCATGTACTCCTCGAATCGCGGAATACTGATAACAATCATTGTTGATGATAACGAGGAATATAAATCATC > 1:2531688/1‑91 TCCATTTTTTATGACGCGCCTTCATGTACTCCTCGAATCGCCGAATACTGATAACAATCATTGTTGATGATAACGAGTAATATAAATCATC > 1:3596945/1‑91 ATTTTTTATGACGCGCCTTCATGTACTCCTCGAATCGCGGAATACTGATAACAATCATTGTTGATGATAACGAGTAATATAAATCATCAAC < 1:2895264/91‑1 TCATTGTTGATGATAACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAA > 1:2256345/1‑91 TTGATGATAACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATG > 1:2696938/1‑91 TGATGATAACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGG > 1:2275987/1‑91 TGATGATAACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGG > 1:528270/1‑91 ATGATAACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGAT > 1:3167889/1‑91 ATGATAACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGAT > 1:956268/1‑91 ATGATAACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGAT > 1:3168074/1‑91 ATGATAACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGAT > 1:1795027/1‑91 TGATAACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATG > 1:4119804/1‑91 ATAACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTA > 1:1670505/1‑91 ATAACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTA > 1:1090802/1‑91 ATAACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTA > 1:2332198/1‑91 ATAACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTA > 1:3273707/1‑91 AACGAGTAATATAAATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGG > 1:523115/1‑91 ATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGA > 1:224289/1‑91 CATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAA > 1:2585416/1‑91 ATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAA > 1:2765348/1‑91 ATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAA > 1:500345/1‑91 TCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAAT < 1:33836/91‑1 TCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAAT > 1:3576302/1‑91 AACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAACTGGATGTAGGAGGCAAGGCAATGAAAATGT > 1:571106/1‑91 AACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGT < 1:2551982/91‑1 AACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGT < 1:2551627/91‑1 AACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGT < 1:1993155/91‑1 CAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGTAC > 1:279970/1‑91 CAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGTAC < 1:4022541/91‑1 CTACATCCATTTTTTATGACGCGCCTTCATGTACTCCTCGAATCGCGGAATACTGATAACAATCATTGTTGATGATAACGAGTAATATAAATCATCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/900272‑900173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGTAC > USA300TCH1516_ALE/900207‑900295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |