BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	900173 =	93 (0.950)	14 (0.160)	7/140	NT	18.0%	coding (174/273 nt)	USA300HOU_RS04450	hypothetical protein
*	?	USA300TCH1516_ALE	900207 =	46 (0.530)	14 (0.160)	7/140	NT	18.0%	coding (208/273 nt)	USA300HOU_RS04450	hypothetical protein

Only 100 of 127 total aligned reads displayed.

GCGAAACCTAATGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAA  >  USA300TCH1516_ALE/900084‑900262

gtacattttcattgccttgcctcctacatccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcattg                                                                                          <  1:4022541‑M1/2‑1 (MQ=255)

gtacattttcattgccttgcctcctacatccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcattg                                                                                          >  1:279970‑M1/90‑91 (MQ=255)

gCGAAACCTAATGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGgtg                                                                                          <  1:1014278/91‑1 (MQ=255)

gCGAAACCTAATGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGgtg                                                                                          >  1:1968043/1‑91 (MQ=255)

gCGAAACCTAATGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGgtg                                                                                          <  1:3806647/91‑1 (MQ=255)

  acattttcattgccttgcctcctacatccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcattgtt                                                                                        <  1:2551982‑M1/4‑1 (MQ=255)

  acattttcattgccttgcctcctacatccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcattgtt                                                                                        <  1:2551627‑M1/4‑1 (MQ=255)

  acattttcattgccttgcctcctacatccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcattgtt                                                                                        <  1:1993155‑M1/4‑1 (MQ=255)

  acattttcattgccttgcctcctacatccagtttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcattgtt                                                                                        >  1:571106‑M1/88‑91 (MQ=255)

    attttcattgccttgcctcctacatccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTtga                                                                                      <  1:33836‑M1/6‑1 (MQ=255)

    attttcattgccttgcctcctacatccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTtga                                                                                      >  1:3576302‑M1/86‑91 (MQ=255)

      ccTAATGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTtgatg                                                                                    >  1:3044173/1‑91 (MQ=255)

      ccTAATGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTtgatg                                                                                    >  1:3704873/1‑91 (MQ=255)

       cTAATGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTtgatga                                                                                   <  1:3092637/91‑1 (MQ=255)

        tcattgccttgcctcctacatccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTgatgat                                                                                  >  1:224289‑M1/82‑91 (MQ=255)

         aaTGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGAtt                                                                                 <  1:3034698/91‑1 (MQ=255)

         aaTGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGAtt                                                                                 >  1:2961525/1‑91 (MQ=255)

         aaTGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGAtt                                                                                 <  1:1715848/91‑1 (MQ=255)

         aaTGCACTAGCTAGTATTTTGGGAAGTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGAtt                                                                                 <  1:3851899/91‑1 (MQ=255)

          aTGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATGGCATTTTAAAAGAGTGGGACAAAGATTCTAAAGGTGTTGATGAttt                                                                                <  1:3297030/91‑1 (MQ=255)

          aTGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGAttt                                                                                <  1:2518762/91‑1 (MQ=255)

           tGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTta                                                                               >  1:1979088/1‑91 (MQ=255)

           tGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTta                                                                               >  1:1979060/1‑91 (MQ=255)

            gCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTtat                                                                              <  1:3003238/91‑1 (MQ=255)

             cACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTtata                                                                             >  1:2662320/1‑91 (MQ=255)

              aCTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTatat                                                                            <  1:2071517/91‑1 (MQ=255)

                tagctagTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTa                                                                          <  1:237742/91‑1 (MQ=255)

                tagctagTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTa                                                                          <  1:788656/91‑1 (MQ=255)

                tagctagTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTa                                                                          <  1:788564/91‑1 (MQ=255)

                 agctagTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAGAAAGATTCTAAAGGTGTTGATGATTTATATTAc                                                                         <  1:789803/91‑1 (MQ=255)

                 agctagTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTAc                                                                         <  1:3033292/91‑1 (MQ=255)

                 agctagTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTAc                                                                         <  1:3032677/91‑1 (MQ=255)

                   ctagTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTc                                                                       <  1:382554/91‑1 (MQ=255)

                   ctagTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGCAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTc                                                                       <  1:3492611/91‑1 (MQ=255)

                    tagTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCg                                                                      >  1:917643/1‑91 (MQ=255)

                     agTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGt                                                                     <  1:1110698/91‑1 (MQ=255)

                     agTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGt                                                                     <  1:2794601/91‑1 (MQ=255)

                      gTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGtt                                                                    >  1:3153808/1‑91 (MQ=255)

                      gTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGtt                                                                    >  1:3937759/1‑91 (MQ=255)

                      cctacatccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTGATGATTTATATTACTCGtt                                                                    >  1:523115‑M1/68‑91 (MQ=255)

                       tATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTa                                                                   >  1:3664721/1‑91 (MQ=255)

                        tacatccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTGATGATTTATATTACTCGTTat                                                                  >  1:1090802‑M1/66‑91 (MQ=255)

                        tacatccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTGATGATTTATATTACTCGTTat                                                                  >  1:1670505‑M1/66‑91 (MQ=255)

                        tacatccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTGATGATTTATATTACTCGTTat                                                                  >  1:3273707‑M1/66‑91 (MQ=255)

                        aTTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTat                                                                  <  1:3555187/91‑1 (MQ=255)

                        aTTTCGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTat                                                                  <  1:3455488/91‑1 (MQ=255)

                        aTTTAGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTat                                                                  <  1:3455530/91‑1 (MQ=255)

                         ttttGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTatc                                                                 <  1:2423103/91‑1 (MQ=255)

                         ttttGGGAATGTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTatc                                                                 <  1:4067877/91‑1 (MQ=255)

                          tttGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTatca                                                                <  1:390939/91‑1 (MQ=255)

                          catccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTGATGATTTATATTACTCGTTatca                                                                >  1:4119804‑M1/64‑91 (MQ=255)

                           atccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTGATGATTTATATTACTCGTTatcat                                                               >  1:3167889‑M1/63‑91 (MQ=255)

                           atccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTGATGATTTATATTACTCGTTatcat                                                               >  1:3168074‑M1/63‑91 (MQ=255)

                           atccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTGATGATTTATATTACTCGTTatcat                                                               >  1:956268‑M1/63‑91 (MQ=255)

                           atccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTGATGATTTATATTACTCGTTatcat                                                               >  1:1795027‑M1/63‑91 (MQ=255)

                             ccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTGATGATTTATATTACTCGTTAtcatca                                                             >  1:2275987‑M1/61‑91 (MQ=255)

                             ccattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTGATGATTTATATTACTCGTTAtcatca                                                             >  1:528270‑M1/61‑91 (MQ=255)

                              cattttttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTGATGATTTATATTACTCGTTATCATcaa                                                            >  1:2696938‑M1/60‑91 (MQ=255)

                               gAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATcaac                                                           <  1:1141493/91‑1 (MQ=255)

                                aaTTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATcaaca                                                          <  1:2985826/91‑1 (MQ=255)

                                  tttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAAt                                                        >  1:3464699/1‑91 (MQ=255)

                                  tttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAAt                                                        >  1:2580953/1‑91 (MQ=255)

                                  tttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAAt                                                        <  1:405268/91‑1 (MQ=255)

                                  tttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAAt                                                        >  1:2454419/1‑91 (MQ=255)

                                  tttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATGCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAAt                                                        >  1:4140141/1‑91 (MQ=255)

                                   ttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATg                                                       >  1:2298987/1‑91 (MQ=255)

                                   ttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATg                                                       >  1:2298585/1‑91 (MQ=255)

                                       tataGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTg                                                   >  1:2608493/1‑91 (MQ=255)

                                         taGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGtt                                                 <  1:2795735/91‑1 (MQ=255)

                                         taGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGtt                                                 <  1:2795234/91‑1 (MQ=255)

                                            ttCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATc                                              <  1:1245399/91‑1 (MQ=255)

                                              cGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAg                                            >  1:1922473/1‑91 (MQ=255)

                                              cGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAg                                            >  1:1922453/1‑91 (MQ=255)

                                              cGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAg                                            >  1:1922574/1‑91 (MQ=255)

                                                   aaTCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTc                                       <  1:1035382/91‑1 (MQ=255)

                                                    aTCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTcc                                      >  1:2370847/1‑91 (MQ=255)

                                                    aTCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTGATCAGTATTcc                                      >  1:3764065/1‑91 (MQ=255)

                                                     tCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCcg                                     <  1:1699584/91‑1 (MQ=255)

                                                       gCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCcgcg                                   >  1:1697293/1‑91 (MQ=255)

                                                       gCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCcgcg                                   <  1:231133/91‑1 (MQ=255)

                                                        cATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGa                                  <  1:703127/91‑1 (MQ=255)

                                                         aTTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGAt                                 <  1:3030442/91‑1 (MQ=255)

                                                          ttttAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGAtt                                >  1:2334400/1‑91 (MQ=255)

                                                           tttAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTc                               <  1:908078/91‑1 (MQ=255)

                                                                aaGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCgagga                          >  1:1295054/1‑91 (MQ=255)

                                                                 agagTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCgaggag                         >  1:1364379/1‑91 (MQ=255)

                                                                       ggAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATg                   >  1:2363173/1‑91 (MQ=255)

                                                                       ggAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATg                   >  1:2362712/1‑91 (MQ=255)

                                                                          aaaaGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAg                <  1:3587393/91‑1 (MQ=255)

                                                                             aGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGgcg             <  1:394450/91‑1 (MQ=255)

                                                                                ttCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGt          <  1:2683935/91‑1 (MQ=255)

                                                                                 tCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTc         <  1:3830897/91‑1 (MQ=255)

                                                                                 tCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTc         <  1:1551267/91‑1 (MQ=255)

                                                                                  cTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCa        >  1:1775495/1‑91 (MQ=255)

                                                                                  cTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCa        >  1:1913254/1‑91 (MQ=255)

                                                                                  cTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCa        <  1:196143/91‑1 (MQ=255)

                                                                                  cTAAAGGTGTTGATGATTTATATGACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCa        <  1:2982409/91‑1 (MQ=255)

                                                                                   tAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCAt       >  1:3270311/1‑91 (MQ=255)

                                                                                   tAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATGCCGCGATTCGAGGAGTACATGAAGGCGCGTCAt       <  1:544605/91‑1 (MQ=255)

                                                                                    aaaGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATa      <  1:3095658/91‑1 (MQ=255)

GCGAAACCTAATGCACTAGCTAGTATTTTGGGAATTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAA  >  USA300TCH1516_ALE/900084‑900262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.